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The map label for this gene is aplA [H]

Identifier: 148243134

GI number: 148243134

Start: 1764396

End: 1764986

Strand: Direct

Name: aplA [H]

Synonym: SynRCC307_2035

Alternate gene names: 148243134

Gene position: 1764396-1764986 (Clockwise)

Preceding gene: 148243133

Following gene: 148243135

Centisome position: 79.3

GC content: 62.27

Gene sequence:

>591_bases
GTGAGCGCACCCTCGAGCGACACCATTCGCCAGCTGGCGGCCAAGGCGCAAGTGCTGGGCCTGCCGCAACATCCCAACCT
CAGTAAGAGCACCCGCCACCTGCTGCAACAAGCTGATCAAGAGCGCCGCCTGCTGAGCAGCAGCGAAATCCAAAGCCTGT
GCCAGCACAGCGGCGTGATGACTGCACCGCTGGAGCAGCTTCAAGGCCAAGCCCATCAGTTGGTGAACCAAGCACGCCAG
GACCTATTGGAGGCCAAGCCCCACTTGGTGAAACCGGGAGGGGCGCTCTACCCAGAGCATCGCGCTGAGGCCTGCTGGCG
CGACTGCTTCCATTTCTTGCGCGTCTGCTGCTACGCCGTCGCCGTCGCCCAGCCCAAGTTCACCAACCCCGAAGGCATGG
CGGCGCTAGGGGAGTTGTATGCCGCCCTTGGCGTACCCGTCGATGGGCTCCTGCTGGCCCTGGCCCGTCTGCAAGAACTC
GCAGCTCAGAGCTACAGCGAATCAGCCCCATCATTGGATGCGGAGCTATTGGATGAAGCCTTCTGCGAGCTGCGATCGCA
AATCAATGCCTGTGTCGTTACGAGCTGCTAA

Upstream 100 bases:

>100_bases
AAGCCGTGACCTGGGCGCTATGGCTTGATCGCCATGGCTGGTTGAGCGCATCACCGGTGCCTCGCTCTGGTGAGCTGACC
TGGCTGATGCCAGCGCAATC

Downstream 100 bases:

>100_bases
GTCAGCCCGAAAGGCCTGCTCACCAACAGCACAATGAGCGTCCTTTCCATTTCCCCGCGGCCCAATGGCGATCCCTCTGC
TGGATTACCCCCTCACATCG

Product: allophycocyanin-like protein

Products: NA

Alternate protein names: Allophycocyanin gamma chain [H]

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSAPSSDTIRQLAAKAQVLGLPQHPNLSKSTRHLLQQADQERRLLSSSEIQSLCQHSGVMTAPLEQLQGQAHQLVNQARQ
DLLEAKPHLVKPGGALYPEHRAEACWRDCFHFLRVCCYAVAVAQPKFTNPEGMAALGELYAALGVPVDGLLLALARLQEL
AAQSYSESAPSLDAELLDEAFCELRSQINACVVTSC

Sequences:

>Translated_196_residues
MSAPSSDTIRQLAAKAQVLGLPQHPNLSKSTRHLLQQADQERRLLSSSEIQSLCQHSGVMTAPLEQLQGQAHQLVNQARQ
DLLEAKPHLVKPGGALYPEHRAEACWRDCFHFLRVCCYAVAVAQPKFTNPEGMAALGELYAALGVPVDGLLLALARLQEL
AAQSYSESAPSLDAELLDEAFCELRSQINACVVTSC
>Mature_195_residues
SAPSSDTIRQLAAKAQVLGLPQHPNLSKSTRHLLQQADQERRLLSSSEIQSLCQHSGVMTAPLEQLQGQAHQLVNQARQD
LLEAKPHLVKPGGALYPEHRAEACWRDCFHFLRVCCYAVAVAQPKFTNPEGMAALGELYAALGVPVDGLLLALARLQELA
AQSYSESAPSLDAELLDEAFCELRSQINACVVTSC

Specific function: Allophycocyanin is a photosynthetic bile pigment-protein complex with maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 21299; Mature: 21167

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPSSDTIRQLAAKAQVLGLPQHPNLSKSTRHLLQQADQERRLLSSSEIQSLCQHSGVM
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TAPLEQLQGQAHQLVNQARQDLLEAKPHLVKPGGALYPEHRAEACWRDCFHFLRVCCYAV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AVAQPKFTNPEGMAALGELYAALGVPVDGLLLALARLQELAAQSYSESAPSLDAELLDEA
HHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FCELRSQINACVVTSC
HHHHHHHHCHHHHCCC
>Mature Secondary Structure 
SAPSSDTIRQLAAKAQVLGLPQHPNLSKSTRHLLQQADQERRLLSSSEIQSLCQHSGVM
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TAPLEQLQGQAHQLVNQARQDLLEAKPHLVKPGGALYPEHRAEACWRDCFHFLRVCCYAV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AVAQPKFTNPEGMAALGELYAALGVPVDGLLLALARLQELAAQSYSESAPSLDAELLDEA
HHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FCELRSQINACVVTSC
HHHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3130540 [H]