| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242824
Identifier: 148242824
GI number: 148242824
Start: 1510983
End: 1512755
Strand: Direct
Name: 148242824
Synonym: SynRCC307_1725
Alternate gene names: NA
Gene position: 1510983-1512755 (Clockwise)
Preceding gene: 148242823
Following gene: 148242825
Centisome position: 67.91
GC content: 59.62
Gene sequence:
>1773_bases TTGCTATTGCGTCAGAACTCAGTAAGTTTTCGCAAGCTGAAGCGCCCACCGGTGAAGTCTCAGTTGTTGCTGCGCACCGG TGGCTTGATCGGCAAGCTGGTTGTTCTCAACGCTCTGGTACTGCCAGGAGCCTTTATTGGCGAGCAGCTGGTGGGCGGGA ATGAAGCGAAGGCGCGAACTGTTGAAGTAGATGGTTACGAATGCACCTGGACACCCAACGCGAACATATTTCCAGGTGAA GATGCGACTCGTCCGGGATCATGGAGTTGTGTACCGAAGTGGATCTTCGAACAGGAATTCCCTGAAGACCCAGGCAGACC ACCCAATATCCCACCCTTCGAAGAGATAATCCCGCCAGGTCCGGGAGATGAAGAGATAATCCCGCCAGATCCGGGAGATG AAGAGATAATCCCGCCAGATCCGGGAGATGAAGAGATAATCCCGCCAGATCCGGGAGATAATTCAAATCGAGTACCTCCT GGTCCTGGCAGCCCCCCACCTGCCGAGGCACGCCGCCGTTGTGGTGAAGGCCGCTGCCTGGCCATCTTGCGCAGCTTCCG CCCCCCCAACCCGGACAAGGGAACGCAAGCTGTCAGCTTCTACAACCAGGCGCTGATGGAGCGCTTGCCGCTGCTCACCT ACGAAAAAATCACGATTGAGCCGGAGCCCGAACCAGTGATCGAGCCTGCACCGAGCGAACCGGTGCGTGGCCTCTGGAAA ACCACGCCAGTGGGCGATGAAAAGCTCTACGACTTTGAGCTCGACGGCACCTTCTACAAGGCATCGGATTCAGTCACCTC CTATTACGCCGAACGCGAAAGCCTGCGGACTTGGGTGAAGGGCTTTGGCGGCAGCACCAGCAACTTCGACCCCGACCGCT GGGGCCATCGCGAATTCAACGCCACCTTTGGTGGTGGTGTTGTGGGACTCGACTACTCCTTCACCGATAACTTCCAGCTC GGTGGCTATGCCAACTACGGCAAGATCAACACCACCGAATATTCCCCGGTGAATCCAGACTGGGATCCCAATGGCTGGGG CGGCGGCGTCAAAGCCGTTTACTGGACCGACAATTTCTATGTGCAGGGTGTGCTGGGGCGCACCCAGTGGAATGGCGAGC AGGTTCGCGATATCCCCGCCAGCGGCCGCTTCGGCTACCTCACCGATGCACAAGTTGCCGCGAGCAGTCGCCCCGATCTA ATTGGCGCGCTGCGCACCGTCAAACCGCAAGCCAGCGGCGATAAAACCCTGAACAGCACCGTGGGAGCCGTGCGGGTGGG CTTGCCGATGCAAGTGGGCAAGTTCTACTTCGAACCGCGCTTCACCGGCACCTACAGCAACAACCAAGAAGAGGGCTTCA CCGAAAGCCGCGGCGCCTTCCCCTTCAACCTGCGCTACGGCGAGCGCACCACCAACTACTGGTTCACGGATCTGGGCTTC AAGTTGGCCCTGCCGATGCGCACCAAGCAGCGCGGTGCCCTGGTGACACCCAATCTGCTGGTGTCGTGGATGGGGAATTG GGATCAGGGCAATCCAGCCCAGCGCTACTACGCCACGTTCAGGAATAGCCAGGGGCAAAAGGGCAGCTACTTCGTGCGCT CCGGGGCTGAGAACGAAAACGCCCTGGTGCTGGAGGGCGGCCTCGACTACACGGTGAGGAACATCAACGCCACCTCGTTC CTGCTCTATGCCCGCGGCGGGGCGCTGATTTGGGATGACGCCACCAAACCCGCCGACTGGCGCGCTTCCGGCGGCTTCAC CTTCCAGTTCTGA
Upstream 100 bases:
>100_bases GCCCGGCGCTGAGGCTGAGCGCTGGAGCACATTCGTCAACGAACTGGAAAGGTTGGGGCGCCTGAAGAGGGGTTAATTGC AGTGAACGGCAACCAATTGG
Downstream 100 bases:
>100_bases TCCCAGGCCACATCAAGCGGCAGGATGGTTGTTGGCCTGCTGCTGTTGTGACTGACGCCTTCCCACCCACCAGTGCTGCT GAGGTGCTCGCTCTCTGCGA
Product: autotransporter beta-domain-containing protein
Products: NA
Alternate protein names: Autotransporter Beta-Domain-Containing Protein
Number of amino acids: Translated: 590; Mature: 590
Protein sequence:
>590_residues MLLRQNSVSFRKLKRPPVKSQLLLRTGGLIGKLVVLNALVLPGAFIGEQLVGGNEAKARTVEVDGYECTWTPNANIFPGE DATRPGSWSCVPKWIFEQEFPEDPGRPPNIPPFEEIIPPGPGDEEIIPPDPGDEEIIPPDPGDEEIIPPDPGDNSNRVPP GPGSPPPAEARRRCGEGRCLAILRSFRPPNPDKGTQAVSFYNQALMERLPLLTYEKITIEPEPEPVIEPAPSEPVRGLWK TTPVGDEKLYDFELDGTFYKASDSVTSYYAERESLRTWVKGFGGSTSNFDPDRWGHREFNATFGGGVVGLDYSFTDNFQL GGYANYGKINTTEYSPVNPDWDPNGWGGGVKAVYWTDNFYVQGVLGRTQWNGEQVRDIPASGRFGYLTDAQVAASSRPDL IGALRTVKPQASGDKTLNSTVGAVRVGLPMQVGKFYFEPRFTGTYSNNQEEGFTESRGAFPFNLRYGERTTNYWFTDLGF KLALPMRTKQRGALVTPNLLVSWMGNWDQGNPAQRYYATFRNSQGQKGSYFVRSGAENENALVLEGGLDYTVRNINATSF LLYARGGALIWDDATKPADWRASGGFTFQF
Sequences:
>Translated_590_residues MLLRQNSVSFRKLKRPPVKSQLLLRTGGLIGKLVVLNALVLPGAFIGEQLVGGNEAKARTVEVDGYECTWTPNANIFPGE DATRPGSWSCVPKWIFEQEFPEDPGRPPNIPPFEEIIPPGPGDEEIIPPDPGDEEIIPPDPGDEEIIPPDPGDNSNRVPP GPGSPPPAEARRRCGEGRCLAILRSFRPPNPDKGTQAVSFYNQALMERLPLLTYEKITIEPEPEPVIEPAPSEPVRGLWK TTPVGDEKLYDFELDGTFYKASDSVTSYYAERESLRTWVKGFGGSTSNFDPDRWGHREFNATFGGGVVGLDYSFTDNFQL GGYANYGKINTTEYSPVNPDWDPNGWGGGVKAVYWTDNFYVQGVLGRTQWNGEQVRDIPASGRFGYLTDAQVAASSRPDL IGALRTVKPQASGDKTLNSTVGAVRVGLPMQVGKFYFEPRFTGTYSNNQEEGFTESRGAFPFNLRYGERTTNYWFTDLGF KLALPMRTKQRGALVTPNLLVSWMGNWDQGNPAQRYYATFRNSQGQKGSYFVRSGAENENALVLEGGLDYTVRNINATSF LLYARGGALIWDDATKPADWRASGGFTFQF >Mature_590_residues MLLRQNSVSFRKLKRPPVKSQLLLRTGGLIGKLVVLNALVLPGAFIGEQLVGGNEAKARTVEVDGYECTWTPNANIFPGE DATRPGSWSCVPKWIFEQEFPEDPGRPPNIPPFEEIIPPGPGDEEIIPPDPGDEEIIPPDPGDEEIIPPDPGDNSNRVPP GPGSPPPAEARRRCGEGRCLAILRSFRPPNPDKGTQAVSFYNQALMERLPLLTYEKITIEPEPEPVIEPAPSEPVRGLWK TTPVGDEKLYDFELDGTFYKASDSVTSYYAERESLRTWVKGFGGSTSNFDPDRWGHREFNATFGGGVVGLDYSFTDNFQL GGYANYGKINTTEYSPVNPDWDPNGWGGGVKAVYWTDNFYVQGVLGRTQWNGEQVRDIPASGRFGYLTDAQVAASSRPDL IGALRTVKPQASGDKTLNSTVGAVRVGLPMQVGKFYFEPRFTGTYSNNQEEGFTESRGAFPFNLRYGERTTNYWFTDLGF KLALPMRTKQRGALVTPNLLVSWMGNWDQGNPAQRYYATFRNSQGQKGSYFVRSGAENENALVLEGGLDYTVRNINATSF LLYARGGALIWDDATKPADWRASGGFTFQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65267; Mature: 65267
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLRQNSVSFRKLKRPPVKSQLLLRTGGLIGKLVVLNALVLPGAFIGEQLVGGNEAKART CCCCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEE VEVDGYECTWTPNANIFPGEDATRPGSWSCVPKWIFEQEFPEDPGRPPNIPPFEEIIPPG EEECCEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCC PGDEEIIPPDPGDEEIIPPDPGDEEIIPPDPGDNSNRVPPGPGSPPPAEARRRCGEGRCL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHH AILRSFRPPNPDKGTQAVSFYNQALMERLPLLTYEKITIEPEPEPVIEPAPSEPVRGLWK HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCC TTPVGDEKLYDFELDGTFYKASDSVTSYYAERESLRTWVKGFGGSTSNFDPDRWGHREFN CCCCCCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC ATFGGGVVGLDYSFTDNFQLGGYANYGKINTTEYSPVNPDWDPNGWGGGVKAVYWTDNFY CCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEE VQGVLGRTQWNGEQVRDIPASGRFGYLTDAQVAASSRPDLIGALRTVKPQASGDKTLNST EEEEECCCCCCCCHHEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHC VGAVRVGLPMQVGKFYFEPRFTGTYSNNQEEGFTESRGAFPFNLRYGERTTNYWFTDLGF CCEEEECCCHHHCCEEECCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCE KLALPMRTKQRGALVTPNLLVSWMGNWDQGNPAQRYYATFRNSQGQKGSYFVRSGAENEN EEECCCCCCCCCCEECHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCC ALVLEGGLDYTVRNINATSFLLYARGGALIWDDATKPADWRASGGFTFQF EEEEECCCCEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEC >Mature Secondary Structure MLLRQNSVSFRKLKRPPVKSQLLLRTGGLIGKLVVLNALVLPGAFIGEQLVGGNEAKART CCCCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEE VEVDGYECTWTPNANIFPGEDATRPGSWSCVPKWIFEQEFPEDPGRPPNIPPFEEIIPPG EEECCEEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCC PGDEEIIPPDPGDEEIIPPDPGDEEIIPPDPGDNSNRVPPGPGSPPPAEARRRCGEGRCL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHH AILRSFRPPNPDKGTQAVSFYNQALMERLPLLTYEKITIEPEPEPVIEPAPSEPVRGLWK HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCC TTPVGDEKLYDFELDGTFYKASDSVTSYYAERESLRTWVKGFGGSTSNFDPDRWGHREFN CCCCCCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC ATFGGGVVGLDYSFTDNFQLGGYANYGKINTTEYSPVNPDWDPNGWGGGVKAVYWTDNFY CCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEE VQGVLGRTQWNGEQVRDIPASGRFGYLTDAQVAASSRPDLIGALRTVKPQASGDKTLNST EEEEECCCCCCCCHHEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHC VGAVRVGLPMQVGKFYFEPRFTGTYSNNQEEGFTESRGAFPFNLRYGERTTNYWFTDLGF CCEEEECCCHHHCCEEECCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCE KLALPMRTKQRGALVTPNLLVSWMGNWDQGNPAQRYYATFRNSQGQKGSYFVRSGAENEN EEECCCCCCCCCCEECHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCC ALVLEGGLDYTVRNINATSFLLYARGGALIWDDATKPADWRASGGFTFQF EEEEECCCCEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA