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The map label for this gene is 148242804

Identifier: 148242804

GI number: 148242804

Start: 1488928

End: 1489848

Strand: Direct

Name: 148242804

Synonym: SynRCC307_1705

Alternate gene names: NA

Gene position: 1488928-1489848 (Clockwise)

Preceding gene: 148242803

Following gene: 148242806

Centisome position: 66.92

GC content: 63.52

Gene sequence:

>921_bases
CTGAGCATCCGGGTTCCCCTCGTTTACCACCCGCTCTACAGCGCTCCACTGCCCTCCAGCCATCGCTTCCCGATGGCTAA
GTTCCGGCAGCTGCGCCAGTGCCTGGCCGATAAGGGGCTCGCGCAAGAACAGCAAGTTCATCAGCCGCTGCCCTGCCCGC
GGCGCTGGCTTGAGCTGGTGCACCCGCGCCGCTATCACCAGGCCTTTGCCCGCGGTGAGTTAGATCGTCAGGCCCAGCGG
CGCATTGGCTTGCCAGCCACCCAACCCTTGGTGCAGCGCACCTGGCTGTCGGTGGGGGGCACGCTGCGCACGGCGCAACT
GGCTCTTGAACACGGCATGGCCTGCCACCTGGCGGGCGGCACCCACCACGCCTTTCCCGATTACGGCAGCGGCTTTTGCA
TCTTCAATGACATCGCCGTGACCGCCAGCGTCTTGCTGCAGCAAGGTCTGGTGAACAAGCTCATGGTTGTGGATCTTGAT
GTGCATCAAGGCGATGCCACCGCAGCGATCTTTACTGGCGAGCCGAGGGTGTTCACCTTCTCGGCCCACGCCGCCAGCAA
CTTCCCCTCGCGTAAACAAAGCAGCGATCTCGATCTGCCGTTGGCCGATGGCCTCGAAGATCAGGCCTATCTACAAAGCG
TGGGAGATGTGCTGCCGGCGCTGCTCGATCAGCAGCAACCGGATTTGGTGCTCTACAACGCCGGCGTCGATCCACACCGA
GCCGATCGCCTCGGCAAGTTGGCCCTCAGCGATCAGGGCCTGTTGCAGCGGGATCACCTGGTCTTTGATGCCTGCCTCAG
GCGCAACATCCCTGTGGCCAGCGTGATTGGCGGCGGTTACGACACGATGGACGCGCTGGTGGAGCGCCATGCCTTGGTGT
TCAGGGCCGCCGCGGATCAAGCCCGTTTGCACGGGCTTTAA

Upstream 100 bases:

>100_bases
TCGGCCGCTTGATGGAGGTCTCCCGCGAGCGGGTGCGTCAGGTGGAACTCAAAGCCCTGCGCAAACTCCGTAACCTCACC
CGGCGCGTTCCAACCCAGCT

Downstream 100 bases:

>100_bases
GGCTCAGTCTTCCGCCCAGATGTAGCGGGTGAGCTCACTGGCATCCGGCTCGGGAGCCGCCAGGGCGAACTCAACGGCTT
CGCGCACTTCGGCATCGATC

Product: histone deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSIRVPLVYHPLYSAPLPSSHRFPMAKFRQLRQCLADKGLAQEQQVHQPLPCPRRWLELVHPRRYHQAFARGELDRQAQR
RIGLPATQPLVQRTWLSVGGTLRTAQLALEHGMACHLAGGTHHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLD
VHQGDATAAIFTGEPRVFTFSAHAASNFPSRKQSSDLDLPLADGLEDQAYLQSVGDVLPALLDQQQPDLVLYNAGVDPHR
ADRLGKLALSDQGLLQRDHLVFDACLRRNIPVASVIGGGYDTMDALVERHALVFRAAADQARLHGL

Sequences:

>Translated_306_residues
MSIRVPLVYHPLYSAPLPSSHRFPMAKFRQLRQCLADKGLAQEQQVHQPLPCPRRWLELVHPRRYHQAFARGELDRQAQR
RIGLPATQPLVQRTWLSVGGTLRTAQLALEHGMACHLAGGTHHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLD
VHQGDATAAIFTGEPRVFTFSAHAASNFPSRKQSSDLDLPLADGLEDQAYLQSVGDVLPALLDQQQPDLVLYNAGVDPHR
ADRLGKLALSDQGLLQRDHLVFDACLRRNIPVASVIGGGYDTMDALVERHALVFRAAADQARLHGL
>Mature_305_residues
SIRVPLVYHPLYSAPLPSSHRFPMAKFRQLRQCLADKGLAQEQQVHQPLPCPRRWLELVHPRRYHQAFARGELDRQAQRR
IGLPATQPLVQRTWLSVGGTLRTAQLALEHGMACHLAGGTHHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLDV
HQGDATAAIFTGEPRVFTFSAHAASNFPSRKQSSDLDLPLADGLEDQAYLQSVGDVLPALLDQQQPDLVLYNAGVDPHRA
DRLGKLALSDQGLLQRDHLVFDACLRRNIPVASVIGGGYDTMDALVERHALVFRAAADQARLHGL

Specific function: Putative deacetylase [H]

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family [H]

Homologues:

Organism=Homo sapiens, GI217272877, Length=301, Percent_Identity=31.8936877076412, Blast_Score=138, Evalue=6e-33,
Organism=Homo sapiens, GI209862883, Length=276, Percent_Identity=31.5217391304348, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI13128860, Length=277, Percent_Identity=27.7978339350181, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI293336691, Length=255, Percent_Identity=28.2352941176471, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI13128862, Length=180, Percent_Identity=32.2222222222222, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI8923769, Length=301, Percent_Identity=25.9136212624585, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI13128864, Length=157, Percent_Identity=31.2101910828025, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI17158039, Length=152, Percent_Identity=29.6052631578947, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI30795204, Length=152, Percent_Identity=29.6052631578947, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI30795202, Length=152, Percent_Identity=29.6052631578947, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI262073092, Length=232, Percent_Identity=28.0172413793103, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI62750349, Length=153, Percent_Identity=30.0653594771242, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI62750347, Length=153, Percent_Identity=30.0653594771242, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI148539870, Length=153, Percent_Identity=30.718954248366, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI169234807, Length=153, Percent_Identity=30.718954248366, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI153085395, Length=153, Percent_Identity=30.0653594771242, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193207430, Length=305, Percent_Identity=29.1803278688525, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17537347, Length=188, Percent_Identity=33.5106382978723, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17508561, Length=221, Percent_Identity=29.8642533936652, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17561978, Length=280, Percent_Identity=26.0714285714286, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17534739, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25154022, Length=208, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25154020, Length=203, Percent_Identity=25.615763546798, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17540332, Length=176, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193206283, Length=176, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17540334, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323999, Length=277, Percent_Identity=27.0758122743682, Blast_Score=89, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6321244, Length=285, Percent_Identity=25.6140350877193, Blast_Score=82, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6325325, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324307, Length=248, Percent_Identity=24.1935483870968, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24649807, Length=318, Percent_Identity=30.188679245283, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24657891, Length=282, Percent_Identity=28.3687943262411, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24644244, Length=260, Percent_Identity=29.6153846153846, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24642144, Length=184, Percent_Identity=26.6304347826087, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24642142, Length=184, Percent_Identity=26.6304347826087, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24642146, Length=184, Percent_Identity=26.6304347826087, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281360899, Length=184, Percent_Identity=26.6304347826087, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000286 [H]

Pfam domain/function: PF00850 Hist_deacetyl [H]

EC number: NA

Molecular weight: Translated: 33743; Mature: 33612

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRVPLVYHPLYSAPLPSSHRFPMAKFRQLRQCLADKGLAQEQQVHQPLPCPRRWLELV
CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHH
HPRRYHQAFARGELDRQAQRRIGLPATQPLVQRTWLSVGGTLRTAQLALEHGMACHLAGG
CHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCC
THHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLDVHQGDATAAIFTGEPRVFTF
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEECCCEEEEE
SAHAASNFPSRKQSSDLDLPLADGLEDQAYLQSVGDVLPALLDQQQPDLVLYNAGVDPHR
ECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH
ADRLGKLALSDQGLLQRDHLVFDACLRRNIPVASVIGGGYDTMDALVERHALVFRAAADQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHH
ARLHGL
HHHCCC
>Mature Secondary Structure 
SIRVPLVYHPLYSAPLPSSHRFPMAKFRQLRQCLADKGLAQEQQVHQPLPCPRRWLELV
CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHH
HPRRYHQAFARGELDRQAQRRIGLPATQPLVQRTWLSVGGTLRTAQLALEHGMACHLAGG
CHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCC
THHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLDVHQGDATAAIFTGEPRVFTF
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEECCCEEEEE
SAHAASNFPSRKQSSDLDLPLADGLEDQAYLQSVGDVLPALLDQQQPDLVLYNAGVDPHR
ECCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHH
ADRLGKLALSDQGLLQRDHLVFDACLRRNIPVASVIGGGYDTMDALVERHALVFRAAADQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHH
ARLHGL
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7678591 [H]