Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148242692

Identifier: 148242692

GI number: 148242692

Start: 1405528

End: 1406868

Strand: Direct

Name: 148242692

Synonym: SynRCC307_1593

Alternate gene names: NA

Gene position: 1405528-1406868 (Clockwise)

Preceding gene: 148242691

Following gene: 148242697

Centisome position: 63.17

GC content: 63.46

Gene sequence:

>1341_bases
ATGGATCCCTTGCAGCTGGATCCGGCCTGGCCCTCAGCGGTGCCGCTGCTGGATCTGGAAACAGCGCTCGAGCAAAGCCT
GCTGCAGAGCGGTTTGAGCCGGCAGGACTACATCAAACGGCTTGTCCAAGATCTGCACAAACCCAGGCTGCAACCATTGC
TCTGGCTCTTGCCGCGCCGCTGGCGGCTGGCCCCAGCGCAGCTGCCGCAGCAGCTCCATGGCCTGGCTCAATTGCTGGAG
CGCGGCTTGCTCACCCCCAGCCTGCTGGCAGTGCTGGGGGATGAAATGGCCCAGTTGCTGCCGCAACCGGATCAAGCCAC
CACACCACTGGAGCGATGGAGCGGCGCTGGTGAATCCAGCCTCAAGCCCTGGAGCGAGGTGATGGCCCTCAGCCAGAGCG
ATGCGCCGGCTGATGCCACAGGTGCTGAGGCCAAAGCCAGCCATCTGGCACCTGGGTTGGTGTGGAACAACCTGGGGCTG
CATTACGGCCAGAACCAGGCGCGCCGCCAGGCCAACAGCGCAGCCGCGCAATGGCTGAACCACCATGCCGCCCGGGGCGG
CAGCCGCGAGCTGATCGAAACGCTGCAACAACGGGGCTGGCAGATCAAAGCCCGCTTCCGCGCCAGCGTGGCGAGCTTTG
GACTCGGGGCCTGCTTCCGCAGCCAAGCCAGCGACAGCTGGCAGCAAATCCCCATCGGCCTACCGATGCGCAGCGGCTTG
CTGGATCAAAACGGTCAAGAGATCACCATGCTGCTGCCCCACAGCGCTGTGGAGATGGAGCTGTGCGGGGAAGGCTGCGA
GCTGCTATTGCAGTTTTATCAAGGCACTGAAGGGATCTGCGGCTGGGAAGCCCTCAATGATTTGCAGCGCCCTTGGCAGA
ACGATCGCCATAACGGCACGGTTCGCTACATGGGCGAGCCATGGCAGGGAAGCAACCTACTGGAGCTGATGGACCTCACC
GATGTGATGGCTCTGGTGCACAACAGTGTGGCCAGTGAGCTGCAGCTGCGCTGGGGCGGCTACGGCTCGGTGGGCTACTG
CATCGACACCACCGCCCTGGTGCAACAGGCCTTGCTGGATCAGTGCGATCTGTTCCCGCTACTGCTCAATGGCATCTGGA
GGGAACGGCTACTGCGCACCAGCCAACGGCTACCTGCTAGCAGCGCGCTGCAGCGCTATCAGAAGGCGCTGATGGAGCTA
CCACTGGATCTCTCCCATCACGGCAGCAGCAGTACTGAGGCCTGGCAACGCCTGCAGGGCTGTCAGCCCCTATCCAGCCC
TTTCTGTCTGTCGCAACACATCCAACACGCGCCCAACGACGTCACCGCGGTAGCGCTCTGA

Upstream 100 bases:

>100_bases
CTAACGGCCTTGGTCAGCCTGCCGGTGCTGGCTTGGTGGGGCTTGTTTCTAGTGGTGGTGCCTTACACCACACCGGTTGA
GGAGCAGGAGAGCTGAGGCC

Downstream 100 bases:

>100_bases
AAAGGGACCGCGGTTGCCGTTGTGATTCATGCCGGCAATCACTTCACGTTGCACCAATCCCTGGCGGCACACCTTGTTCC
ACTTGCTGAAGGGCAGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDPLQLDPAWPSAVPLLDLETALEQSLLQSGLSRQDYIKRLVQDLHKPRLQPLLWLLPRRWRLAPAQLPQQLHGLAQLLE
RGLLTPSLLAVLGDEMAQLLPQPDQATTPLERWSGAGESSLKPWSEVMALSQSDAPADATGAEAKASHLAPGLVWNNLGL
HYGQNQARRQANSAAAQWLNHHAARGGSRELIETLQQRGWQIKARFRASVASFGLGACFRSQASDSWQQIPIGLPMRSGL
LDQNGQEITMLLPHSAVEMELCGEGCELLLQFYQGTEGICGWEALNDLQRPWQNDRHNGTVRYMGEPWQGSNLLELMDLT
DVMALVHNSVASELQLRWGGYGSVGYCIDTTALVQQALLDQCDLFPLLLNGIWRERLLRTSQRLPASSALQRYQKALMEL
PLDLSHHGSSSTEAWQRLQGCQPLSSPFCLSQHIQHAPNDVTAVAL

Sequences:

>Translated_446_residues
MDPLQLDPAWPSAVPLLDLETALEQSLLQSGLSRQDYIKRLVQDLHKPRLQPLLWLLPRRWRLAPAQLPQQLHGLAQLLE
RGLLTPSLLAVLGDEMAQLLPQPDQATTPLERWSGAGESSLKPWSEVMALSQSDAPADATGAEAKASHLAPGLVWNNLGL
HYGQNQARRQANSAAAQWLNHHAARGGSRELIETLQQRGWQIKARFRASVASFGLGACFRSQASDSWQQIPIGLPMRSGL
LDQNGQEITMLLPHSAVEMELCGEGCELLLQFYQGTEGICGWEALNDLQRPWQNDRHNGTVRYMGEPWQGSNLLELMDLT
DVMALVHNSVASELQLRWGGYGSVGYCIDTTALVQQALLDQCDLFPLLLNGIWRERLLRTSQRLPASSALQRYQKALMEL
PLDLSHHGSSSTEAWQRLQGCQPLSSPFCLSQHIQHAPNDVTAVAL
>Mature_446_residues
MDPLQLDPAWPSAVPLLDLETALEQSLLQSGLSRQDYIKRLVQDLHKPRLQPLLWLLPRRWRLAPAQLPQQLHGLAQLLE
RGLLTPSLLAVLGDEMAQLLPQPDQATTPLERWSGAGESSLKPWSEVMALSQSDAPADATGAEAKASHLAPGLVWNNLGL
HYGQNQARRQANSAAAQWLNHHAARGGSRELIETLQQRGWQIKARFRASVASFGLGACFRSQASDSWQQIPIGLPMRSGL
LDQNGQEITMLLPHSAVEMELCGEGCELLLQFYQGTEGICGWEALNDLQRPWQNDRHNGTVRYMGEPWQGSNLLELMDLT
DVMALVHNSVASELQLRWGGYGSVGYCIDTTALVQQALLDQCDLFPLLLNGIWRERLLRTSQRLPASSALQRYQKALMEL
PLDLSHHGSSSTEAWQRLQGCQPLSSPFCLSQHIQHAPNDVTAVAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49465; Mature: 49465

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLQLDPAWPSAVPLLDLETALEQSLLQSGLSRQDYIKRLVQDLHKPRLQPLLWLLPRR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
WRLAPAQLPQQLHGLAQLLERGLLTPSLLAVLGDEMAQLLPQPDQATTPLERWSGAGESS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC
LKPWSEVMALSQSDAPADATGAEAKASHLAPGLVWNNLGLHYGQNQARRQANSAAAQWLN
CCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HHAARGGSRELIETLQQRGWQIKARFRASVASFGLGACFRSQASDSWQQIPIGLPMRSGL
HHHCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHCCC
LDQNGQEITMLLPHSAVEMELCGEGCELLLQFYQGTEGICGWEALNDLQRPWQNDRHNGT
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCE
VRYMGEPWQGSNLLELMDLTDVMALVHNSVASELQLRWGGYGSVGYCIDTTALVQQALLD
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QCDLFPLLLNGIWRERLLRTSQRLPASSALQRYQKALMELPLDLSHHGSSSTEAWQRLQG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
CQPLSSPFCLSQHIQHAPNDVTAVAL
CCCCCCCHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MDPLQLDPAWPSAVPLLDLETALEQSLLQSGLSRQDYIKRLVQDLHKPRLQPLLWLLPRR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
WRLAPAQLPQQLHGLAQLLERGLLTPSLLAVLGDEMAQLLPQPDQATTPLERWSGAGESS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC
LKPWSEVMALSQSDAPADATGAEAKASHLAPGLVWNNLGLHYGQNQARRQANSAAAQWLN
CCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HHAARGGSRELIETLQQRGWQIKARFRASVASFGLGACFRSQASDSWQQIPIGLPMRSGL
HHHCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHCCC
LDQNGQEITMLLPHSAVEMELCGEGCELLLQFYQGTEGICGWEALNDLQRPWQNDRHNGT
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCE
VRYMGEPWQGSNLLELMDLTDVMALVHNSVASELQLRWGGYGSVGYCIDTTALVQQALLD
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QCDLFPLLLNGIWRERLLRTSQRLPASSALQRYQKALMELPLDLSHHGSSSTEAWQRLQG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
CQPLSSPFCLSQHIQHAPNDVTAVAL
CCCCCCCHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA