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The map label for this gene is ctpA [H]

Identifier: 148242562

GI number: 148242562

Start: 1300076

End: 1301416

Strand: Direct

Name: ctpA [H]

Synonym: SynRCC307_1463

Alternate gene names: 148242562

Gene position: 1300076-1301416 (Clockwise)

Preceding gene: 148242561

Following gene: 148242566

Centisome position: 58.43

GC content: 60.7

Gene sequence:

>1341_bases
ATGGCTTCAACGCGTCTGCGTCGCATCGCCCTTGTCGCCCTGGCCGGTGCCGGCAGTTTCGCGGGAACCCTCGTTCTAAG
TAGTGATCTGCTGCTGCACAGCAGCACCGCCGCGATCATCTCCGACAGCCCCAAGGAGGTGATGGATGAGGCCTGGCAGA
TCGTGTTCCGCGACTACCTCGACACCACGGGGAACTACAGCGAGGAGAAGTGGAAGACCCTGCGGCGGGATCTGCTGAGC
AAGAGCTACGGCAATACCAAAGACGCCTATGAAGCCATTCGGGGCATGCTCGGCACCCTGGATGACCCCTACACGCGGTT
CATGGACCCGCGTGAATTCAAGGAGATGGAAATCGACACCTCAGGGGAACTCTCTGGGGTGGGTATTCAACTGAGCCTCG
ACAAGGACAGCAAAGAGCTGGTGGTGGTTTCACCCATCGACGGCTCACCCGCCTCGCGGGCGGGGGTGCAACCCCAAGAT
GTGATCACGGCCATCGACGGCAAAAGCACCCGGGGGATGACCACCGAAGACGCGGTCAAGCTGATTCGCGGCAAGGTTGG
CACCAAGGTGGTGCTGGAACTGCGCCGCGGCGCCGGTCAATTCGTGACCGTGGATTTGATTCGCGATCGGATCGAACTGG
CCGCCGTTGATTCCAGCGTGAATGTGGCCCCCAACGGCGCCAAGGTGGGCTACATCCGCCTGAAGCAGTTCAACGCCAAT
GCGGCGAAGGACATGCGCAACGCCATCAATGAACTCAGCGGTGAGGGCGTCAGCGGTTTTGTGCTGGATCTGCGCAGTAA
CCCCGGCGGCTTGCTGATGGCGAGCGTGGAAATCGCCAGGCAGTGGCTCGATGAAGGCGTGATCGTCTCCAGCTCCACCC
GTGATGGGGTGAGTGATGTCAAACGGGCCAGCGGCCGTGCCCTGACCAAGGCGCCGTTGGTGGTGCTCGTTAATGAAGGC
AGCGCCAGCGCCAGCGAGATCCTCTCGGGCGCCATTCAAGACAACAACCGCGGTGTTGTGGTCGGCAAGAAGACCTTCGG
CAAGGGGCTGATCCAGTCGGTGCGTGGGCTCTCCGATGGCTCCGGGATGACGGTGACCATCGCCAAGTACCTCACCCCCA
GCGGCAAAGACATCCACAAACAGGGCATCACCCCGGATGTGAATGCCAACCTCAGCAAAGCCCAGGCTCAGCGCCTGAAA
TTTGAAGACCTCGGTACCCGCAATGACCCTCAATACCGGGTCGCCGAATCAGAGCTTGCCAAGCTGCTGCGCCAAAGCAA
TGCGAAGCCCGAAGTGAGCTTTGAGGGAGACGTTCAACTGAACGTTTTCAGCGCCAACTAA

Upstream 100 bases:

>100_bases
ATCCCTGAAGCTGGGGCCACATCCAGTCACAGACCAGCCGGCAGGCGCTCTAACCAAAGCCCAACCGTGACGTTACGGTT
GGTAGATACTGGCAACTTCC

Downstream 100 bases:

>100_bases
AAATCAGGAAACCGGCTGCATCAAGCCGCCGCCGGGGCTGGAATCGTCGTCGTCGTTGCTCTCGGATTGCCACAAGGCGA
AGAAACCCAGAGCCACGGCG

Product: carboxyl-terminal processing protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MASTRLRRIALVALAGAGSFAGTLVLSSDLLLHSSTAAIISDSPKEVMDEAWQIVFRDYLDTTGNYSEEKWKTLRRDLLS
KSYGNTKDAYEAIRGMLGTLDDPYTRFMDPREFKEMEIDTSGELSGVGIQLSLDKDSKELVVVSPIDGSPASRAGVQPQD
VITAIDGKSTRGMTTEDAVKLIRGKVGTKVVLELRRGAGQFVTVDLIRDRIELAAVDSSVNVAPNGAKVGYIRLKQFNAN
AAKDMRNAINELSGEGVSGFVLDLRSNPGGLLMASVEIARQWLDEGVIVSSSTRDGVSDVKRASGRALTKAPLVVLVNEG
SASASEILSGAIQDNNRGVVVGKKTFGKGLIQSVRGLSDGSGMTVTIAKYLTPSGKDIHKQGITPDVNANLSKAQAQRLK
FEDLGTRNDPQYRVAESELAKLLRQSNAKPEVSFEGDVQLNVFSAN

Sequences:

>Translated_446_residues
MASTRLRRIALVALAGAGSFAGTLVLSSDLLLHSSTAAIISDSPKEVMDEAWQIVFRDYLDTTGNYSEEKWKTLRRDLLS
KSYGNTKDAYEAIRGMLGTLDDPYTRFMDPREFKEMEIDTSGELSGVGIQLSLDKDSKELVVVSPIDGSPASRAGVQPQD
VITAIDGKSTRGMTTEDAVKLIRGKVGTKVVLELRRGAGQFVTVDLIRDRIELAAVDSSVNVAPNGAKVGYIRLKQFNAN
AAKDMRNAINELSGEGVSGFVLDLRSNPGGLLMASVEIARQWLDEGVIVSSSTRDGVSDVKRASGRALTKAPLVVLVNEG
SASASEILSGAIQDNNRGVVVGKKTFGKGLIQSVRGLSDGSGMTVTIAKYLTPSGKDIHKQGITPDVNANLSKAQAQRLK
FEDLGTRNDPQYRVAESELAKLLRQSNAKPEVSFEGDVQLNVFSAN
>Mature_445_residues
ASTRLRRIALVALAGAGSFAGTLVLSSDLLLHSSTAAIISDSPKEVMDEAWQIVFRDYLDTTGNYSEEKWKTLRRDLLSK
SYGNTKDAYEAIRGMLGTLDDPYTRFMDPREFKEMEIDTSGELSGVGIQLSLDKDSKELVVVSPIDGSPASRAGVQPQDV
ITAIDGKSTRGMTTEDAVKLIRGKVGTKVVLELRRGAGQFVTVDLIRDRIELAAVDSSVNVAPNGAKVGYIRLKQFNANA
AKDMRNAINELSGEGVSGFVLDLRSNPGGLLMASVEIARQWLDEGVIVSSSTRDGVSDVKRASGRALTKAPLVVLVNEGS
ASASEILSGAIQDNNRGVVVGKKTFGKGLIQSVRGLSDGSGMTVTIAKYLTPSGKDIHKQGITPDVNANLSKAQAQRLKF
EDLGTRNDPQYRVAESELAKLLRQSNAKPEVSFEGDVQLNVFSAN

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=328, Percent_Identity=33.2317073170732, Blast_Score=137, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47867; Mature: 47736

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTRLRRIALVALAGAGSFAGTLVLSSDLLLHSSTAAIISDSPKEVMDEAWQIVFRDYL
CCCHHHHHEEEEEEECCCCHHEEEEEECCCEEECCCCEEECCCHHHHHHHHHHHHHHHHH
DTTGNYSEEKWKTLRRDLLSKSYGNTKDAYEAIRGMLGTLDDPYTRFMDPREFKEMEIDT
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHEECCC
SGELSGVGIQLSLDKDSKELVVVSPIDGSPASRAGVQPQDVITAIDGKSTRGMTTEDAVK
CCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHEEEECCCCCCCCCHHHHHH
LIRGKVGTKVVLELRRGAGQFVTVDLIRDRIELAAVDSSVNVAPNGAKVGYIRLKQFNAN
HHHCCCCHHHHHHHHHCCCCEEEHHHHHHHHHEEEECCCCEECCCCCEEEEEEEEECCCH
AAKDMRNAINELSGEGVSGFVLDLRSNPGGLLMASVEIARQWLDEGVIVSSSTRDGVSDV
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCEEEECCCCCCHHHH
KRASGRALTKAPLVVLVNEGSASASEILSGAIQDNNRGVVVGKKTFGKGLIQSVRGLSDG
HHHCCCEEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCC
SGMTVTIAKYLTPSGKDIHKQGITPDVNANLSKAQAQRLKFEDLGTRNDPQYRVAESELA
CCCEEEEEEHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCHHHCCCCCCCCEEHHHHHHH
KLLRQSNAKPEVSFEGDVQLNVFSAN
HHHHHCCCCCCEEECCCEEEEEEECC
>Mature Secondary Structure 
ASTRLRRIALVALAGAGSFAGTLVLSSDLLLHSSTAAIISDSPKEVMDEAWQIVFRDYL
CCHHHHHEEEEEEECCCCHHEEEEEECCCEEECCCCEEECCCHHHHHHHHHHHHHHHHH
DTTGNYSEEKWKTLRRDLLSKSYGNTKDAYEAIRGMLGTLDDPYTRFMDPREFKEMEIDT
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHEECCC
SGELSGVGIQLSLDKDSKELVVVSPIDGSPASRAGVQPQDVITAIDGKSTRGMTTEDAVK
CCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHEEEECCCCCCCCCHHHHHH
LIRGKVGTKVVLELRRGAGQFVTVDLIRDRIELAAVDSSVNVAPNGAKVGYIRLKQFNAN
HHHCCCCHHHHHHHHHCCCCEEEHHHHHHHHHEEEECCCCEECCCCCEEEEEEEEECCCH
AAKDMRNAINELSGEGVSGFVLDLRSNPGGLLMASVEIARQWLDEGVIVSSSTRDGVSDV
HHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCEEEECCCCCCHHHH
KRASGRALTKAPLVVLVNEGSASASEILSGAIQDNNRGVVVGKKTFGKGLIQSVRGLSDG
HHHCCCEEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCC
SGMTVTIAKYLTPSGKDIHKQGITPDVNANLSKAQAQRLKFEDLGTRNDPQYRVAESELA
CCCEEEEEEHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCHHHCCCCCCCCEEHHHHHHH
KLLRQSNAKPEVSFEGDVQLNVFSAN
HHHHHCCCCCCEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]