Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148242508

Identifier: 148242508

GI number: 148242508

Start: 1252838

End: 1253119

Strand: Direct

Name: 148242508

Synonym: SynRCC307_1409

Alternate gene names: NA

Gene position: 1252838-1253119 (Clockwise)

Preceding gene: 148242507

Following gene: 148242515

Centisome position: 56.31

GC content: 62.41

Gene sequence:

>282_bases
ATGGGACGGGTGGTGATCACCCACAGCACCTACCTCGAAGGATTGATCCCGCTGCTCAAGCAATTGGCCAAGGATCCCCA
AGTGGTGACGGTGACACCGGCGGTGATCAGCCGCGTCAAAGGCCGCTGCCAAGGACTCAAGCTGCGGATCTCAGCACCCA
TTAGCGGGGGCCACAAAGTGGTGGCTCGGCGCGGCACCAGCGCACAGGAGGTGTTCGTTGTCACGCCCCTGGAGCGCAGC
GCCTTGCAGCAGCGGCTCGACGCCTTACTCAATAACCCTTGA

Upstream 100 bases:

>100_bases
GCCGTGGTTTGGGTGGGTCCGCAGGAGCAAGCCGAGCTATATCACATGCAATTGGGCGCTGAGGGCCTGACCATGGCCCC
ACTGGAGCGGGCCTGAGGCC

Downstream 100 bases:

>100_bases
GTTCAATCCCATTGCCTTCCGGATCGGTGAACTGAATCGACGGACCATCCCCATCTGTGCCAAAGCGGCTTTGCAAGGTG
GCTTTGGCATCGATGCCATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MGRVVITHSTYLEGLIPLLKQLAKDPQVVTVTPAVISRVKGRCQGLKLRISAPISGGHKVVARRGTSAQEVFVVTPLERS
ALQQRLDALLNNP

Sequences:

>Translated_93_residues
MGRVVITHSTYLEGLIPLLKQLAKDPQVVTVTPAVISRVKGRCQGLKLRISAPISGGHKVVARRGTSAQEVFVVTPLERS
ALQQRLDALLNNP
>Mature_92_residues
GRVVITHSTYLEGLIPLLKQLAKDPQVVTVTPAVISRVKGRCQGLKLRISAPISGGHKVVARRGTSAQEVFVVTPLERSA
LQQRLDALLNNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10064; Mature: 9933

Theoretical pI: Translated: 11.55; Mature: 11.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRVVITHSTYLEGLIPLLKQLAKDPQVVTVTPAVISRVKGRCQGLKLRISAPISGGHKV
CCCEEEECHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCEEEEEECCCCCCCEE
VARRGTSAQEVFVVTPLERSALQQRLDALLNNP
EEECCCCCCEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GRVVITHSTYLEGLIPLLKQLAKDPQVVTVTPAVISRVKGRCQGLKLRISAPISGGHKV
CCEEEECHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCEEEEEECCCCCCCEE
VARRGTSAQEVFVVTPLERSALQQRLDALLNNP
EEECCCCCCEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA