| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242447
Identifier: 148242447
GI number: 148242447
Start: 1194665
End: 1195450
Strand: Direct
Name: 148242447
Synonym: SynRCC307_1348
Alternate gene names: NA
Gene position: 1194665-1195450 (Clockwise)
Preceding gene: 148242445
Following gene: 148242451
Centisome position: 53.69
GC content: 63.36
Gene sequence:
>786_bases GTGCCGCTGAGCCGCTTCCCCACTGCCATTACCGCCAGTCTGTTGGGTCTAGCCGCCCTGCTTCCGGCCACCCAACCCTG GGAGGGTTGGAGTTTGCCGGCTGAGCCTGAGCTTCAACAACTCATGGCGGAGGGCGGGCAACCCAACCCAGCCGATTTCA GCCCTGAAGAGCTGCAAGAGCTGCAGCGCCGCTTTGGGGTGCATGGTCCGCAGCCGGCCTTGGCTCAGCTCCTAACAGCA GGCCTGGATCAATGGCAGCCGCTGCGGCGCAACACCCTCGAGCAGATCCAAAGCCTCGTTCCCACCATCCGCCGTGAGGC CAGGGCTCGCACCCTCAACCCGATGCTGCTGGGGGCCATCCTTTACGACGAAATTCAACATGCCAAGCCGGGCGAAAATT CCCCTTGGCTTGTGCATTCCGGCTTGCTGCAAACCCACGGGCCCGCTCAGCTCGGTGTTGAAGAGCTGATCCATCAAGGC TTGCTGCCCGCCGATCCCAGCCCCGAGCAGCGTCAACAGGCCCGCGAACAACTGCTCGATCCCCAGCGCAATGTGGCCCT CCTCGCTGGAAAGATGGCTCGGCTCTCCAGCGCCTTGGGCATCCCCAGCGGACACCTCTTGGAGGCCAGCAACGGCTACC GCGATGCCCACTGGATCGCCACCTTGGCCTACCTGCACAACGGCAAACTCGATTATCCGGCCCGGATCTTGGGGTACATG CAAGATCCAGCCCTGCACGCCTTGATCTACGGGCGCACCCTTCGGCTCACCAACCCGATCATCTAG
Upstream 100 bases:
>100_bases GAAGACAGTGATCACCAAAAGCCAAGAACATTCTTGGATTGTGTAGTGATTTTGACTGGCCTTCATAAATTCAGTTTGTC AGAGATATCTGCGAGCACCA
Downstream 100 bases:
>100_bases CGGCTCAGCAAACCAGACCTAAGGCCGTAAGCCTGGTTTGCAGCTGCTGCCAATCAAAACTGCGTGGGTCGCTGCGGGCA TTACCCAGATCCACATGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MPLSRFPTAITASLLGLAALLPATQPWEGWSLPAEPELQQLMAEGGQPNPADFSPEELQELQRRFGVHGPQPALAQLLTA GLDQWQPLRRNTLEQIQSLVPTIRREARARTLNPMLLGAILYDEIQHAKPGENSPWLVHSGLLQTHGPAQLGVEELIHQG LLPADPSPEQRQQAREQLLDPQRNVALLAGKMARLSSALGIPSGHLLEASNGYRDAHWIATLAYLHNGKLDYPARILGYM QDPALHALIYGRTLRLTNPII
Sequences:
>Translated_261_residues MPLSRFPTAITASLLGLAALLPATQPWEGWSLPAEPELQQLMAEGGQPNPADFSPEELQELQRRFGVHGPQPALAQLLTA GLDQWQPLRRNTLEQIQSLVPTIRREARARTLNPMLLGAILYDEIQHAKPGENSPWLVHSGLLQTHGPAQLGVEELIHQG LLPADPSPEQRQQAREQLLDPQRNVALLAGKMARLSSALGIPSGHLLEASNGYRDAHWIATLAYLHNGKLDYPARILGYM QDPALHALIYGRTLRLTNPII >Mature_260_residues PLSRFPTAITASLLGLAALLPATQPWEGWSLPAEPELQQLMAEGGQPNPADFSPEELQELQRRFGVHGPQPALAQLLTAG LDQWQPLRRNTLEQIQSLVPTIRREARARTLNPMLLGAILYDEIQHAKPGENSPWLVHSGLLQTHGPAQLGVEELIHQGL LPADPSPEQRQQAREQLLDPQRNVALLAGKMARLSSALGIPSGHLLEASNGYRDAHWIATLAYLHNGKLDYPARILGYMQ DPALHALIYGRTLRLTNPII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28751; Mature: 28620
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSRFPTAITASLLGLAALLPATQPWEGWSLPAEPELQQLMAEGGQPNPADFSPEELQE CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH LQRRFGVHGPQPALAQLLTAGLDQWQPLRRNTLEQIQSLVPTIRREARARTLNPMLLGAI HHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LYDEIQHAKPGENSPWLVHSGLLQTHGPAQLGVEELIHQGLLPADPSPEQRQQAREQLLD HHHHHHHCCCCCCCCEEEECCCHHCCCCHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHC PQRNVALLAGKMARLSSALGIPSGHLLEASNGYRDAHWIATLAYLHNGKLDYPARILGYM CCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH QDPALHALIYGRTLRLTNPII CCHHHHHHHHCCHHHHCCCCC >Mature Secondary Structure PLSRFPTAITASLLGLAALLPATQPWEGWSLPAEPELQQLMAEGGQPNPADFSPEELQE CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH LQRRFGVHGPQPALAQLLTAGLDQWQPLRRNTLEQIQSLVPTIRREARARTLNPMLLGAI HHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LYDEIQHAKPGENSPWLVHSGLLQTHGPAQLGVEELIHQGLLPADPSPEQRQQAREQLLD HHHHHHHCCCCCCCCEEEECCCHHCCCCHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHC PQRNVALLAGKMARLSSALGIPSGHLLEASNGYRDAHWIATLAYLHNGKLDYPARILGYM CCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH QDPALHALIYGRTLRLTNPII CCHHHHHHHHCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA