Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148242417

Identifier: 148242417

GI number: 148242417

Start: 1167860

End: 1168216

Strand: Direct

Name: 148242417

Synonym: SynRCC307_1318

Alternate gene names: NA

Gene position: 1167860-1168216 (Clockwise)

Preceding gene: 148242416

Following gene: 148242421

Centisome position: 52.49

GC content: 60.78

Gene sequence:

>357_bases
ATGAGCTTTGATCCCCGCAGCTTGGAGCGTCTCCAGGAACTGGGTCGCCAACTCCCCAAGCCCCTGGAGGCACCAACGCC
CCAAGCCCAGACGAAGCCTCAGCGGCAACACCGGGTTGAGATCGAAGAGGACCCGGAAGAACTCTTTCGCCAATTGATGC
AGGTGAGCCCCGACGGCACGGTGCCTGAGCACCTGATGGCCAGGCTGCGGCAGCTCGAAGCTCAGCGGAAACGAGCACCC
CAGGGAGCGAACGCCAAACGAACATCAGCCAACAAGGGCACGAGCAGCGATCCCAACCAAGACGATTCGCTCTACAGCGA
GTTTGAACAGATGCTGCTGGAAGAGGACGACGCTTAG

Upstream 100 bases:

>100_bases
GCGAGGTGATGCCCTCAGCACCCTGTGTGCCGTGGCCGAAGGCACCAACTCGGTGACAGGTCGCGACACCCGGGACACCC
TGGGCTGCCCTTGAGCTGCC

Downstream 100 bases:

>100_bases
CTCAGGGGCAACAGCACCGGAGCGAAGCTCAGCGCCAAGCCGATCTGCCTGAGTGGGACCCCAAACAGGGTCGAGACCAG
GTCAATGGCGACCGCCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSFDPRSLERLQELGRQLPKPLEAPTPQAQTKPQRQHRVEIEEDPEELFRQLMQVSPDGTVPEHLMARLRQLEAQRKRAP
QGANAKRTSANKGTSSDPNQDDSLYSEFEQMLLEEDDA

Sequences:

>Translated_118_residues
MSFDPRSLERLQELGRQLPKPLEAPTPQAQTKPQRQHRVEIEEDPEELFRQLMQVSPDGTVPEHLMARLRQLEAQRKRAP
QGANAKRTSANKGTSSDPNQDDSLYSEFEQMLLEEDDA
>Mature_117_residues
SFDPRSLERLQELGRQLPKPLEAPTPQAQTKPQRQHRVEIEEDPEELFRQLMQVSPDGTVPEHLMARLRQLEAQRKRAPQ
GANAKRTSANKGTSSDPNQDDSLYSEFEQMLLEEDDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13537; Mature: 13406

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDPRSLERLQELGRQLPKPLEAPTPQAQTKPQRQHRVEIEEDPEELFRQLMQVSPDGT
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCC
VPEHLMARLRQLEAQRKRAPQGANAKRTSANKGTSSDPNQDDSLYSEFEQMLLEEDDA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFDPRSLERLQELGRQLPKPLEAPTPQAQTKPQRQHRVEIEEDPEELFRQLMQVSPDGT
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCC
VPEHLMARLRQLEAQRKRAPQGANAKRTSANKGTSSDPNQDDSLYSEFEQMLLEEDDA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA