| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is pbpG [H]
Identifier: 148242389
GI number: 148242389
Start: 1143391
End: 1145517
Strand: Direct
Name: pbpG [H]
Synonym: SynRCC307_1290
Alternate gene names: 148242389
Gene position: 1143391-1145517 (Clockwise)
Preceding gene: 148242388
Following gene: 148242390
Centisome position: 51.39
GC content: 62.2
Gene sequence:
>2127_bases ATGAGCCCATTCCTACGCCTTCACATCAACGGTGAACCCAGCAGGGAGATCCAGCTGCTGGGGGAGGTGTATCGACTGGG GCGCGATCCCGACGCCGAAATCGTGATCCAGCACCCTGCGATCAGCAAGCGCCATGCCTTGCTGGAGCGCCGCCATGGCC ACTGGCAGCTCAGGGACCAAGGCTCCACCAATGGCTTGAGCTGGAAGGGCCGATCGGTGCAGCTCTTGGCCCTACGCGAT GGGGATCGCATTCGCCTCGGACCAGAGGCTGATCCATCGCTACCGGTGCTGGAGTTCCTTGAGCCCAGCTCCCGCCGTCA ATGGCTCCCCTGGAAGAAGGCACTCAGTTCAGGCCTATTGAGCCTGGCCGGGGCTGGTCTGTTGGTGCTCGGTTTCGGGG CCGTCAGCGTGCCTGTGCGCGGCAGTTTGGCTCCAGTGCGCGGGCCCTTGGTGCTCTACGACCGCAGCGGCACACCGATT AACAGTGGCTTTGATACGAACCACCGCGAAAAGGAGCGTGTTGCCGATTTCGCGCCACCGCTTCGGGCGGCTTTGCTTTC AAGCGAAGACACCCGCTTCTGGTGGCATCCAGGGGTCGATCCGATTGGCATCACCCGTGCCTTGCTCGTCAACATTGCTG GCGGCCAAGTGCTGGAGGGCGGCAGCACCCTCACCCAACAGCTGGCCCGGAGCCTCTATCCCAACGAGGTGGGCGAGGGC GACACGCTGCAGCGCAAATGGAATGAACTGCTGGTCGCGTTGCAATTGGAAGCGCGCTTCAGCAAGCAAACGCTGCTGTT GAGCTACCTCAATCGGGTGTATCTCGGCGTCGGGTGGGGCTTTGAAGATGCCGCGCAGGCCTACTTCAACCACTCAGCCA GTGCGTTGACCTTGCCGCAGGCGGCGCTGCTAGTGGGGCTACTGCCATCGCCCAATGGCCACGACCCCTGCCGCTATCCG GAAGCTGCGCTGGCGGCACGCAATGGTGTGCTCAACAAAATGGTGCGGGAAGGTCGCCTCTCGGCTGATCAAGGACGCAT CGCGCGGCGAACTCCGATTCAACTGGCGCCTGAAGCCTGCACCGGTGTCGCCCGCAGACCAGCTCCCTTCTACAGCGATC AAGTGGAGCGCGATCTGCAGAAGCTCGTTGGTGACGATGTGGCCGCTGAGGGGAACTTCATCGTGGAAACCCATCTCGAC CCAACGCTGCAAGAGGTCGTTGAAGTGACACTGCAGCGATTTCTACGAGCCAACAGCACCAGCGGCATCAACCAAGGGGC CGTTGTGGTGCTCGATAGCCGCACCGGCGGAATCCTCAGCCTGGTGGGGGGGCGCGACTACAGCACCAGCCAATACAACC GAGCCAGCCAAGCCCTGAGGCAGCCCGGAAGCGTGTTCAAACTCTTCCCTTATTTAGTGGCCATAGATCGAGGCGTTAGG CCAACAACACCTGTCTCGGCATCGCCAATCGAGTGGGGAGGCCTGCGTTACAGCCAAGGTTGCCGCGGCAGCAGCAGCCT GCAGCAGGCCTTCGCATCCAGCGACAACTGTGCTGCCTTGCATCTGGCACGCCGCTACAGCCTTGACGCTGTGGTTCGCA AAGCACGCGACTTCGGCATCACGACACCGATGGCAGCGGTCCCGGGTTTGGTGCTTGGGCAATCAGAAACACTGTTGCTG GAGCTCACGGCGGCCTATGCGGCCGTGGCCAATGGGGGCATCTGGACCTCACCGAGCACGATTCGCCGACTGACTGACAC CGAAACCTGTCCACTCGATCCCAGCGATTGTGCCCAGCGCTCCCTGGCCAGCCAACGCAGCCGCCGAGTCTTGCCCACCG ATCAAGCCTTGGTGATGCAAACACTGTTGCGATCGGTGATCCAATCCGGCACGGGCCGTGCTGCCTACCTGGGTGGCAAC GAGGGAGGAAAAACCGGAACGACGAATGAAGGTCGCGATTTGACCTTTATTGGCTACGAACCCAAGCGCCATTGGGTCAT GGGCGTTTGGCTAGGCAATGACGACAACAGCCCCACGGGCCAAACCAGCGCCGCCGCTGCTGGTCTGTGGTGGGAGATCA TGCGCACTGCAGGCCAGGGCACTGCTGATGCGGAGGGCCGGCCATGA
Upstream 100 bases:
>100_bases GCCTTGAACTGGTGCCATTCTCATTTCCCGTCTTCAATTTGGCCGACGTTGCGATCAACTTGGCCGTGTTGTGTCTGTTG ATCGAAGCCATCCGCCAGCG
Downstream 100 bases:
>100_bases AACGCACGCGCCTCTGGCTGATTCTTGGCGGTCTGCTGGTGGTGGTTGTGGTGCTGTCGATCGTGATGCAAGCGATCAAC AGCTTGATTTGGCAGTTGAG
Product: glycosyltransferase
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 708; Mature: 707
Protein sequence:
>708_residues MSPFLRLHINGEPSREIQLLGEVYRLGRDPDAEIVIQHPAISKRHALLERRHGHWQLRDQGSTNGLSWKGRSVQLLALRD GDRIRLGPEADPSLPVLEFLEPSSRRQWLPWKKALSSGLLSLAGAGLLVLGFGAVSVPVRGSLAPVRGPLVLYDRSGTPI NSGFDTNHREKERVADFAPPLRAALLSSEDTRFWWHPGVDPIGITRALLVNIAGGQVLEGGSTLTQQLARSLYPNEVGEG DTLQRKWNELLVALQLEARFSKQTLLLSYLNRVYLGVGWGFEDAAQAYFNHSASALTLPQAALLVGLLPSPNGHDPCRYP EAALAARNGVLNKMVREGRLSADQGRIARRTPIQLAPEACTGVARRPAPFYSDQVERDLQKLVGDDVAAEGNFIVETHLD PTLQEVVEVTLQRFLRANSTSGINQGAVVVLDSRTGGILSLVGGRDYSTSQYNRASQALRQPGSVFKLFPYLVAIDRGVR PTTPVSASPIEWGGLRYSQGCRGSSSLQQAFASSDNCAALHLARRYSLDAVVRKARDFGITTPMAAVPGLVLGQSETLLL ELTAAYAAVANGGIWTSPSTIRRLTDTETCPLDPSDCAQRSLASQRSRRVLPTDQALVMQTLLRSVIQSGTGRAAYLGGN EGGKTGTTNEGRDLTFIGYEPKRHWVMGVWLGNDDNSPTGQTSAAAAGLWWEIMRTAGQGTADAEGRP
Sequences:
>Translated_708_residues MSPFLRLHINGEPSREIQLLGEVYRLGRDPDAEIVIQHPAISKRHALLERRHGHWQLRDQGSTNGLSWKGRSVQLLALRD GDRIRLGPEADPSLPVLEFLEPSSRRQWLPWKKALSSGLLSLAGAGLLVLGFGAVSVPVRGSLAPVRGPLVLYDRSGTPI NSGFDTNHREKERVADFAPPLRAALLSSEDTRFWWHPGVDPIGITRALLVNIAGGQVLEGGSTLTQQLARSLYPNEVGEG DTLQRKWNELLVALQLEARFSKQTLLLSYLNRVYLGVGWGFEDAAQAYFNHSASALTLPQAALLVGLLPSPNGHDPCRYP EAALAARNGVLNKMVREGRLSADQGRIARRTPIQLAPEACTGVARRPAPFYSDQVERDLQKLVGDDVAAEGNFIVETHLD PTLQEVVEVTLQRFLRANSTSGINQGAVVVLDSRTGGILSLVGGRDYSTSQYNRASQALRQPGSVFKLFPYLVAIDRGVR PTTPVSASPIEWGGLRYSQGCRGSSSLQQAFASSDNCAALHLARRYSLDAVVRKARDFGITTPMAAVPGLVLGQSETLLL ELTAAYAAVANGGIWTSPSTIRRLTDTETCPLDPSDCAQRSLASQRSRRVLPTDQALVMQTLLRSVIQSGTGRAAYLGGN EGGKTGTTNEGRDLTFIGYEPKRHWVMGVWLGNDDNSPTGQTSAAAAGLWWEIMRTAGQGTADAEGRP >Mature_707_residues SPFLRLHINGEPSREIQLLGEVYRLGRDPDAEIVIQHPAISKRHALLERRHGHWQLRDQGSTNGLSWKGRSVQLLALRDG DRIRLGPEADPSLPVLEFLEPSSRRQWLPWKKALSSGLLSLAGAGLLVLGFGAVSVPVRGSLAPVRGPLVLYDRSGTPIN SGFDTNHREKERVADFAPPLRAALLSSEDTRFWWHPGVDPIGITRALLVNIAGGQVLEGGSTLTQQLARSLYPNEVGEGD TLQRKWNELLVALQLEARFSKQTLLLSYLNRVYLGVGWGFEDAAQAYFNHSASALTLPQAALLVGLLPSPNGHDPCRYPE AALAARNGVLNKMVREGRLSADQGRIARRTPIQLAPEACTGVARRPAPFYSDQVERDLQKLVGDDVAAEGNFIVETHLDP TLQEVVEVTLQRFLRANSTSGINQGAVVVLDSRTGGILSLVGGRDYSTSQYNRASQALRQPGSVFKLFPYLVAIDRGVRP TTPVSASPIEWGGLRYSQGCRGSSSLQQAFASSDNCAALHLARRYSLDAVVRKARDFGITTPMAAVPGLVLGQSETLLLE LTAAYAAVANGGIWTSPSTIRRLTDTETCPLDPSDCAQRSLASQRSRRVLPTDQALVMQTLLRSVIQSGTGRAAYLGGNE GGKTGTTNEGRDLTFIGYEPKRHWVMGVWLGNDDNSPTGQTSAAAAGLWWEIMRTAGQGTADAEGRP
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=537, Percent_Identity=30.1675977653631, Blast_Score=177, Evalue=3e-45, Organism=Escherichia coli, GI1788867, Length=550, Percent_Identity=31.0909090909091, Blast_Score=173, Evalue=3e-44, Organism=Escherichia coli, GI87082258, Length=257, Percent_Identity=33.852140077821, Blast_Score=130, Evalue=3e-31, Organism=Escherichia coli, GI1789601, Length=173, Percent_Identity=34.1040462427746, Blast_Score=77, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 76766; Mature: 76635
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFLRLHINGEPSREIQLLGEVYRLGRDPDAEIVIQHPAISKRHALLERRHGHWQLRDQ CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC GSTNGLSWKGRSVQLLALRDGDRIRLGPEADPSLPVLEFLEPSSRRQWLPWKKALSSGLL CCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHH SLAGAGLLVLGFGAVSVPVRGSLAPVRGPLVLYDRSGTPINSGFDTNHREKERVADFAPP HHHCCCEEEEECCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCH LRAALLSSEDTRFWWHPGVDPIGITRALLVNIAGGQVLEGGSTLTQQLARSLYPNEVGEG HHHHHHCCCCCEEEECCCCCHHHHHHHHHEECCCCCEECCCHHHHHHHHHHCCCCCCCCC DTLQRKWNELLVALQLEARFSKQTLLLSYLNRVYLGVGWGFEDAAQAYFNHSASALTLPQ HHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCEEECCH AALLVGLLPSPNGHDPCRYPEAALAARNGVLNKMVREGRLSADQGRIARRTPIQLAPEAC HHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHH TGVARRPAPFYSDQVERDLQKLVGDDVAAEGNFIVETHLDPTLQEVVEVTLQRFLRANST HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC SGINQGAVVVLDSRTGGILSLVGGRDYSTSQYNRASQALRQPGSVFKLFPYLVAIDRGVR CCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC PTTPVSASPIEWGGLRYSQGCRGSSSLQQAFASSDNCAALHLARRYSLDAVVRKARDFGI CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC TTPMAAVPGLVLGQSETLLLELTAAYAAVANGGIWTSPSTIRRLTDTETCPLDPSDCAQR CCCHHHCCCEEECCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHH SLASQRSRRVLPTDQALVMQTLLRSVIQSGTGRAAYLGGNEGGKTGTTNEGRDLTFIGYE HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEC PKRHWVMGVWLGNDDNSPTGQTSAAAAGLWWEIMRTAGQGTADAEGRP CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SPFLRLHINGEPSREIQLLGEVYRLGRDPDAEIVIQHPAISKRHALLERRHGHWQLRDQ CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC GSTNGLSWKGRSVQLLALRDGDRIRLGPEADPSLPVLEFLEPSSRRQWLPWKKALSSGLL CCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHH SLAGAGLLVLGFGAVSVPVRGSLAPVRGPLVLYDRSGTPINSGFDTNHREKERVADFAPP HHHCCCEEEEECCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCH LRAALLSSEDTRFWWHPGVDPIGITRALLVNIAGGQVLEGGSTLTQQLARSLYPNEVGEG HHHHHHCCCCCEEEECCCCCHHHHHHHHHEECCCCCEECCCHHHHHHHHHHCCCCCCCCC DTLQRKWNELLVALQLEARFSKQTLLLSYLNRVYLGVGWGFEDAAQAYFNHSASALTLPQ HHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCEEECCH AALLVGLLPSPNGHDPCRYPEAALAARNGVLNKMVREGRLSADQGRIARRTPIQLAPEAC HHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHH TGVARRPAPFYSDQVERDLQKLVGDDVAAEGNFIVETHLDPTLQEVVEVTLQRFLRANST HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC SGINQGAVVVLDSRTGGILSLVGGRDYSTSQYNRASQALRQPGSVFKLFPYLVAIDRGVR CCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC PTTPVSASPIEWGGLRYSQGCRGSSSLQQAFASSDNCAALHLARRYSLDAVVRKARDFGI CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC TTPMAAVPGLVLGQSETLLLELTAAYAAVANGGIWTSPSTIRRLTDTETCPLDPSDCAQR CCCHHHCCCEEECCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHH SLASQRSRRVLPTDQALVMQTLLRSVIQSGTGRAAYLGGNEGGKTGTTNEGRDLTFIGYE HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEC PKRHWVMGVWLGNDDNSPTGQTSAAAAGLWWEIMRTAGQGTADAEGRP CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]