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The map label for this gene is rpe [H]

Identifier: 148242355

GI number: 148242355

Start: 1112168

End: 1112914

Strand: Direct

Name: rpe [H]

Synonym: SynRCC307_1256

Alternate gene names: 148242355

Gene position: 1112168-1112914 (Clockwise)

Preceding gene: 148242347

Following gene: 148242356

Centisome position: 49.99

GC content: 58.23

Gene sequence:

>747_bases
GTGCTGCTGTGGCTAACGGCCGGGAAAGGGTCTCCTACAATCACCGGCCCACCAGTTCAGGCCATGTCCCAGAAATCCCT
GGTTATTTCTCCCTCGATTCTTTCCGCGGACTTTTCCAAGCTTGGAGAGGACGTGCGGGCGGTTGACCAGGCCGGCGCTG
ACTGGATTCACGTCGATGTGATGGATGGCCGCTTTGTGCCCAACATCACCATCGGTCCAATGATTGTTAAGGCCTTGCGG
CCTGTGACCAGCAAGCCGCTGGATGTGCACTTGATGATTGTTGAGCCCGAGAAATACGTCGAGGACTTCGCCAAAGCTGG
CGCAGACATCATCAGCGTCCAAGTGGAGGCCTGCCCCCATCTGCACCGCAACCTGGCTCAGATCAAAGACCTGGGCAAAA
AAGCTGGTGCAGTGCTGAACCCCGGCACCCCAATCGACACCCTCGAATACTGCCTCGAGCTCTGCGATCTGGTGTTGGTG
ATGAGCGTCAACCCTGGTTTTGGCGGCCAGAGCTTCATCGAGAATCAGGTCGACAAGATCCGCGACCTGCGCCGCATGTG
CGACGAGCGCGGCCTCGATCCATGGATCGAAGTTGACGGCGGCATCAAAGCTGGCAATGCCTGGAAAGTGATCGAAGCCG
GCGCCAATGCCATTGTTTCCGGCTCGGGCGTCTTCAATCAGCCCAGTTACGCCGAAGCCATCGAAGGAATCCGCAACAGC
AAGCGCCCTGAACTGGCAGCTGCTTGA

Upstream 100 bases:

>100_bases
CCTCGAGAATTTCCTGGATGAGCGTGCGGTCCAATGTGAGGCGGCGGTAAAGAACAAGGCCCCAGCCGCTCAGACGGCTA
AAGCGGGCAGGACTTTATCA

Downstream 100 bases:

>100_bases
TCCGAACGGAAACCGACGGATGAATTGATCAAGGGGCCGCAAGGCCCCTTGATCATGCTCAATTAGCTGCCAAAAAACCA
GCCAGACTTGCGCAGTTTGT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLLWLTAGKGSPTITGPPVQAMSQKSLVISPSILSADFSKLGEDVRAVDQAGADWIHVDVMDGRFVPNITIGPMIVKALR
PVTSKPLDVHLMIVEPEKYVEDFAKAGADIISVQVEACPHLHRNLAQIKDLGKKAGAVLNPGTPIDTLEYCLELCDLVLV
MSVNPGFGGQSFIENQVDKIRDLRRMCDERGLDPWIEVDGGIKAGNAWKVIEAGANAIVSGSGVFNQPSYAEAIEGIRNS
KRPELAAA

Sequences:

>Translated_248_residues
MLLWLTAGKGSPTITGPPVQAMSQKSLVISPSILSADFSKLGEDVRAVDQAGADWIHVDVMDGRFVPNITIGPMIVKALR
PVTSKPLDVHLMIVEPEKYVEDFAKAGADIISVQVEACPHLHRNLAQIKDLGKKAGAVLNPGTPIDTLEYCLELCDLVLV
MSVNPGFGGQSFIENQVDKIRDLRRMCDERGLDPWIEVDGGIKAGNAWKVIEAGANAIVSGSGVFNQPSYAEAIEGIRNS
KRPELAAA
>Mature_248_residues
MLLWLTAGKGSPTITGPPVQAMSQKSLVISPSILSADFSKLGEDVRAVDQAGADWIHVDVMDGRFVPNITIGPMIVKALR
PVTSKPLDVHLMIVEPEKYVEDFAKAGADIISVQVEACPHLHRNLAQIKDLGKKAGAVLNPGTPIDTLEYCLELCDLVLV
MSVNPGFGGQSFIENQVDKIRDLRRMCDERGLDPWIEVDGGIKAGNAWKVIEAGANAIVSGSGVFNQPSYAEAIEGIRNS
KRPELAAA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=39.906103286385, Blast_Score=147, Evalue=8e-36,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=38.0281690140845, Blast_Score=137, Evalue=7e-33,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=33.7278106508876, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1789788, Length=216, Percent_Identity=50.9259259259259, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=38.8059701492537, Blast_Score=163, Evalue=8e-42,
Organism=Escherichia coli, GI1790754, Length=204, Percent_Identity=31.8627450980392, Blast_Score=105, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=217, Percent_Identity=39.63133640553, Blast_Score=154, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=231, Percent_Identity=40.2597402597403, Blast_Score=164, Evalue=2e-41,
Organism=Drosophila melanogaster, GI24586301, Length=223, Percent_Identity=39.9103139013453, Blast_Score=155, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 26636; Mature: 26636

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLWLTAGKGSPTITGPPVQAMSQKSLVISPSILSADFSKLGEDVRAVDQAGADWIHVDV
CEEEEECCCCCCCCCCCCHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
MDGRFVPNITIGPMIVKALRPVTSKPLDVHLMIVEPEKYVEDFAKAGADIISVQVEACPH
ECCEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEHHHCHH
LHRNLAQIKDLGKKAGAVLNPGTPIDTLEYCLELCDLVLVMSVNPGFGGQSFIENQVDKI
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHH
RDLRRMCDERGLDPWIEVDGGIKAGNAWKVIEAGANAIVSGSGVFNQPSYAEAIEGIRNS
HHHHHHHHHCCCCCEEEECCCEECCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHCC
KRPELAAA
CCCCCCCC
>Mature Secondary Structure
MLLWLTAGKGSPTITGPPVQAMSQKSLVISPSILSADFSKLGEDVRAVDQAGADWIHVDV
CEEEEECCCCCCCCCCCCHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
MDGRFVPNITIGPMIVKALRPVTSKPLDVHLMIVEPEKYVEDFAKAGADIISVQVEACPH
ECCEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEHHHCHH
LHRNLAQIKDLGKKAGAVLNPGTPIDTLEYCLELCDLVLVMSVNPGFGGQSFIENQVDKI
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHH
RDLRRMCDERGLDPWIEVDGGIKAGNAWKVIEAGANAIVSGSGVFNQPSYAEAIEGIRNS
HHHHHHHHHCCCCCEEEECCCEECCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHCC
KRPELAAA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]