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The map label for this gene is dapF [H]

Identifier: 148242289

GI number: 148242289

Start: 1048708

End: 1049781

Strand: Direct

Name: dapF [H]

Synonym: SynRCC307_1190

Alternate gene names: 148242289

Gene position: 1048708-1049781 (Clockwise)

Preceding gene: 148242286

Following gene: 148242290

Centisome position: 47.13

GC content: 62.57

Gene sequence:

>1074_bases
GTGGTCGGGGGCCATACGATCAGATCAGGTGGCCAAAGCGTTTTGACACGTTCGTTTCGGAAATATCAAGGCCTGGGGAA
TGACTTCATCCTCATGGATGGCCGCACAACACCGTTGCCAGAGATGGGCGGTGATCCGGCCAAAGAACTGTGTGATCGCC
GCTTTGGCATTGGCGGTGATGGCCTGATCTTGGCGCTCCCGCCGCAGCAGGGCGGTGATGTGCGCATGCAAATCCTCAAT
GCCGATGGCAGCGAGGCTGAGATGTGCGGCAATGGCATCCGCTGTTTTGCCCGTTTTCTGGCGGATCTTGATGGCTCAGC
CAGCGGCACCCAGTGGCGCGTGGAAACACCGGCCGGGCTGATGATTCCGCGCTTGCTGGAGGGTGATCAGGTCACGGTTG
ACATGGGCGAGCCGTTCCTGGAGCCGGCCTCCATCCCCACCAACCTTGCGGCGGGAACTCCGCTGCCGGATGGCGAATTG
CAGGTGGCTGGGATCTCGCTGCAGGTTGCCGCCGTTGGCATGGGCAATCCCCATGCGGTGGTGCAAGTTGATGACCTGGA
GTCGCTGGACTTCGATCGTCTCGGCCCTGCTCTCGAACAACACCCAGCCTTCCCGGCCCGCACCAATGTTCATTTTGTGC
AGGTGCATGCCCCTGATCAGCTGCAAGTGCGCGTTTGGGAACGGGGTGCTGGCCCCACGCTGGCCTGCGGCACCGGTGCC
TGCGCCACCGTGGTGGCAACCCATCTGCGTGGTGCCTGTGCTCGCCAGGCGACGGTGCAGCTGCCTGGCGGCCCGCTGCA
AATCGACTGGGACAGCACCAATCACATTCAGATGGCCGGTCCAGCGGTCTTTGTGTTTGAAGGGGTTCTGCCCGCAGCCG
GCGGCAGTGATGCCGTTGAGGCCATTGACTGCGCCAGCCTCTGCAGCGACGGCTGCATCCGGCCTGAGGCCTGCCCCAGT
GCTGCGGCACGGGAACAAGCGATGACATTCCTTGATCGTCTGTCGCTTGATGACATGGTGGGTTTGGCGAATTCATCGCT
TGAAGAGCGCACCCGCCGTCGTGCCGGCTTCTAG

Upstream 100 bases:

>100_bases
CTTGCAGTTCCAGGCCGCTGGCGAGCTGGATGCTGATCGTGCGCCGCTGGCGGATCCACTGCTGCAGCAGCCGCACCCCG
GGTAGTGACGTGTCGAGTTC

Downstream 100 bases:

>100_bases
GCCTCTGATCTATCTGGATGCCTGCGCTGCAACGCCCCTCGCTGAGGGGCTTGGGCAACGGCTGCTGGATTACCAACAGC
AGGCTTGGGCTAATCCCTCA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MVGGHTIRSGGQSVLTRSFRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGGDVRMQILN
ADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGEPFLEPASIPTNLAAGTPLPDGEL
QVAGISLQVAAVGMGNPHAVVQVDDLESLDFDRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGA
CATVVATHLRGACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGSDAVEAIDCASLCSDGCIRPEACPS
AAAREQAMTFLDRLSLDDMVGLANSSLEERTRRRAGF

Sequences:

>Translated_357_residues
MVGGHTIRSGGQSVLTRSFRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGGDVRMQILN
ADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGEPFLEPASIPTNLAAGTPLPDGEL
QVAGISLQVAAVGMGNPHAVVQVDDLESLDFDRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGA
CATVVATHLRGACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGSDAVEAIDCASLCSDGCIRPEACPS
AAAREQAMTFLDRLSLDDMVGLANSSLEERTRRRAGF
>Mature_357_residues
MVGGHTIRSGGQSVLTRSFRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGGDVRMQILN
ADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGEPFLEPASIPTNLAAGTPLPDGEL
QVAGISLQVAAVGMGNPHAVVQVDDLESLDFDRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGA
CATVVATHLRGACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGSDAVEAIDCASLCSDGCIRPEACPS
AAAREQAMTFLDRLSLDDMVGLANSSLEERTRRRAGF

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=280, Percent_Identity=42.1428571428571, Blast_Score=207, Evalue=9e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 37550; Mature: 37550

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGGHTIRSGGQSVLTRSFRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGD
CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC
GLILALPPQQGGDVRMQILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGL
CEEEEECCCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
MIPRLLEGDQVTVDMGEPFLEPASIPTNLAAGTPLPDGELQVAGISLQVAAVGMGNPHAV
CCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEE
VQVDDLESLDFDRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGA
EEECCCCCCCHHHCCCHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEECCCH
CATVVATHLRGACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGSDAVE
HHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCEEEECCCEEEEEECCCCCCCCCHHHH
AIDCASLCSDGCIRPEACPSAAAREQAMTFLDRLSLDDMVGLANSSLEERTRRRAGF
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MVGGHTIRSGGQSVLTRSFRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGD
CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC
GLILALPPQQGGDVRMQILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGL
CEEEEECCCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
MIPRLLEGDQVTVDMGEPFLEPASIPTNLAAGTPLPDGELQVAGISLQVAAVGMGNPHAV
CCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEE
VQVDDLESLDFDRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGA
EEECCCCCCCHHHCCCHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEECCCH
CATVVATHLRGACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGSDAVE
HHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCEEEECCCEEEEEECCCCCCCCCHHHH
AIDCASLCSDGCIRPEACPSAAAREQAMTFLDRLSLDDMVGLANSSLEERTRRRAGF
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]