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The map label for this gene is 148242282

Identifier: 148242282

GI number: 148242282

Start: 1042171

End: 1042713

Strand: Direct

Name: 148242282

Synonym: SynRCC307_1183

Alternate gene names: NA

Gene position: 1042171-1042713 (Clockwise)

Preceding gene: 148242273

Following gene: 148242284

Centisome position: 46.84

GC content: 60.41

Gene sequence:

>543_bases
ATGCTGCTGCTGCCGCTTGTGCTGCTGGGGATTGCCTGGTTTCAGGAAAGTCTCGACCAGCTGCTTTTTGGAGGCCGTTG
GGCCCTGCCGATGGTCCATGGCGGGCCGTTTTGGGGTGTGTTGACAGCCCCGTTCAGCCATAGCGATTGGTCACACCTGG
TGTCCAACAGTCTCTGGTTCCTTCCGCTGTCCTATCTCGTCCTACTCAATGGCGTCCGGGCCTATGTGGCCGTTTGGATT
GGTGTGTATGCCACAGCAGCCATCGTGTGGTTGTGGCTGCCTGTGGCAAGCCATGGGCTGTCTGGCGTGGTGTATGGCCT
GCTGGCCTATCTGCTGCTGATTGGTTGGTTGGAGAAGCGACCGTTGAGCGTGATCTTGTCGGTGGGGTGCTTGCTCGCCT
ATGGCGGTTTGCTTCCCGCCTTGTTGCCCTTTCTCAATCCGCCGGGTGTGAGCTGGATCGGCCATCTCTCTGGCTTTGTC
GGTGGCTTGATCGCCGCCGTGGCCGTGCAGCGTCGTCCATCCCCACCTGAGCTGCTGCGGTGA

Upstream 100 bases:

>100_bases
AGGCGGCATCTGCTGTGGCTTGCAAGCCAGCGTTTGAGTAGGTGCCGATCAACCGCATGAGCTTTGGGTTCGTTTGAATA
CGGGTCCTTGATGCGCCGGC

Downstream 100 bases:

>100_bases
GTGCGCTGCCAATGGGTTGATCCAATCAATCCTCCGTTGTCTTTTTGAACCGGCTCAAATCACTGACACTGATTGATTCA
AATACCAAGTTGATAAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLLLPLVLLGIAWFQESLDQLLFGGRWALPMVHGGPFWGVLTAPFSHSDWSHLVSNSLWFLPLSYLVLLNGVRAYVAVWI
GVYATAAIVWLWLPVASHGLSGVVYGLLAYLLLIGWLEKRPLSVILSVGCLLAYGGLLPALLPFLNPPGVSWIGHLSGFV
GGLIAAVAVQRRPSPPELLR

Sequences:

>Translated_180_residues
MLLLPLVLLGIAWFQESLDQLLFGGRWALPMVHGGPFWGVLTAPFSHSDWSHLVSNSLWFLPLSYLVLLNGVRAYVAVWI
GVYATAAIVWLWLPVASHGLSGVVYGLLAYLLLIGWLEKRPLSVILSVGCLLAYGGLLPALLPFLNPPGVSWIGHLSGFV
GGLIAAVAVQRRPSPPELLR
>Mature_180_residues
MLLLPLVLLGIAWFQESLDQLLFGGRWALPMVHGGPFWGVLTAPFSHSDWSHLVSNSLWFLPLSYLVLLNGVRAYVAVWI
GVYATAAIVWLWLPVASHGLSGVVYGLLAYLLLIGWLEKRPLSVILSVGCLLAYGGLLPALLPFLNPPGVSWIGHLSGFV
GGLIAAVAVQRRPSPPELLR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.leprae ML1171 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 19541; Mature: 19541

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLPLVLLGIAWFQESLDQLLFGGRWALPMVHGGPFWGVLTAPFSHSDWSHLVSNSLWF
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHCCHHH
LPLSYLVLLNGVRAYVAVWIGVYATAAIVWLWLPVASHGLSGVVYGLLAYLLLIGWLEKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
PLSVILSVGCLLAYGGLLPALLPFLNPPGVSWIGHLSGFVGGLIAAVAVQRRPSPPELLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
>Mature Secondary Structure
MLLLPLVLLGIAWFQESLDQLLFGGRWALPMVHGGPFWGVLTAPFSHSDWSHLVSNSLWF
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHCCHHH
LPLSYLVLLNGVRAYVAVWIGVYATAAIVWLWLPVASHGLSGVVYGLLAYLLLIGWLEKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
PLSVILSVGCLLAYGGLLPALLPFLNPPGVSWIGHLSGFVGGLIAAVAVQRRPSPPELLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]