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The map label for this gene is sbcD [C]

Identifier: 148242263

GI number: 148242263

Start: 1028277

End: 1029455

Strand: Direct

Name: sbcD [C]

Synonym: SynRCC307_1164

Alternate gene names: 148242263

Gene position: 1028277-1029455 (Clockwise)

Preceding gene: 148242260

Following gene: 148242264

Centisome position: 46.22

GC content: 61.07

Gene sequence:

>1179_bases
GTGTTTGGGGTTCTGCGCTTGGTTCGCTTTCTGCACACGGCGGACTGGCAGATCGGCAAGCCCTATGCCCGGGTGGTTGA
TCCAGACCACCGCGCTCGCCTCAAGCAGGTTCGGATTGCTGTGATCCAACGCATGGCGCTGTTCGTGCAACGGCAGCAGC
TGGATTTCGTTCTGGTGGCGGGGGATCTATTTGACTCGCCAGCACCAGCCCGCTCAGAGGTTGCTCAAGCGTTGAGTGCC
ATCGGCCAAATCCCTGCTCCTGTGCTGGTCATTCCCGGGAACCACGACCATGGCGGTCCTGGCAGCCTTTGGCATCAGGG
CTGGTTTCAGGAGCTCAGCGCCGATGTCGCCCCCAATCTTCAGATCTTGCTCGAGCGGCAGCCGGTGTCGTTATGCGGGG
CTGTGGTGTTGCCGTGTCCCCTGATGCGCCAAACCGCTGTCGAGGATCCGCTCAGCTGGCTGACGCAGCTCAACACCAGT
GAATTGCCCGACGGTCCCCGGATTGTTTTGGCCCACGGATCTGTTCAAAGCTTTGCGGCCCTTGATTCCCAGGAGGCCAG
CTCCAACCAGCTGTCTCTTGAGCAGCTTCCGCAGGGCCTCTGCGATTACATCGCCTTGGGTGATTGGCACGGCCTCAAGC
AGGTCAGCGCCAACGCCTGGTATTGCGGCTGTCCTGAACAGGATCGCTTCCCTCGCACTGCCGATTACGCCAGTTCCCAG
GTGTTGCTGGTGGAGCTGGAGCGTGGCTGCTCTCCTGCCGTCAGCATCGAGCCCACAGGCGCCCTGCAGTGGCATCACAT
CACCATGCGGCTGCAGGGGGATGCTGATCTCGAGTTGCTCGAGCGCCAGGTTCAACAGCATCTGGGTCAGCGCAGTGGTG
AAGACCTGTTGCTGCTGGAGCTCGACGGCCAGCTGTCCTTGACCGGTGCCGCACGGCTGGAAGCTTGGCTGACGTCGCTG
TCAAGCCGTCTGTTGCGTTTAAAACATCGCCAGCGGGTGCGAACTCTCCCGAGTGACGCCGAACTGGCACCTTTGTTGGA
CCGGCCTGGTGATCCGTTGTTTGCTCGGGTGGTGAGCTCTTTGAAAGAGCAGAGCCTCCAACAGGACAATGCCGAAGAAT
CGCGCTTGGCCGTTCTGGCCTTGCGGGAGTTGCAACTGCTGGCATCCCAGGAGATCTGA

Upstream 100 bases:

>100_bases
TTTATTCCCCTGTTTTGTGTCTGTTCATGACTGAGCGAAGGGGTTTTGCCTCTGGCACAGGGCATGGGGACGAATCGCCA
GTAGTACGCTAGAACTAGCG

Downstream 100 bases:

>100_bases
CCATGCAGTTGCTTCAGATCACCCTTGAGCATGTGCGCCTGCACCGGCAGTTGAACCTGCCGCTGGCCAGTGGCATCACG
GTCCTTGAGGGGGCCAACGA

Product: DNA repair exonuclease

Products: NA

Alternate protein names: DNA Repair Exonuclease; Exonuclease; Exonuclease SbcD; Ser/Thr Protein Phosphatase Family Protein; Exodeoxyribonuclease I Subunit D; Exonuclease SbcD Family Protein; Calcineurin-Like Phosphoesterase Family; ATP-Dependent DsDNA Exonuclease SbcD; Nuclease SbcCD Subunit D; DNA Repair Exonuclease Or Phosphoesterase; DNA Repair Exonuclease SbcD

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MFGVLRLVRFLHTADWQIGKPYARVVDPDHRARLKQVRIAVIQRMALFVQRQQLDFVLVAGDLFDSPAPARSEVAQALSA
IGQIPAPVLVIPGNHDHGGPGSLWHQGWFQELSADVAPNLQILLERQPVSLCGAVVLPCPLMRQTAVEDPLSWLTQLNTS
ELPDGPRIVLAHGSVQSFAALDSQEASSNQLSLEQLPQGLCDYIALGDWHGLKQVSANAWYCGCPEQDRFPRTADYASSQ
VLLVELERGCSPAVSIEPTGALQWHHITMRLQGDADLELLERQVQQHLGQRSGEDLLLLELDGQLSLTGAARLEAWLTSL
SSRLLRLKHRQRVRTLPSDAELAPLLDRPGDPLFARVVSSLKEQSLQQDNAEESRLAVLALRELQLLASQEI

Sequences:

>Translated_392_residues
MFGVLRLVRFLHTADWQIGKPYARVVDPDHRARLKQVRIAVIQRMALFVQRQQLDFVLVAGDLFDSPAPARSEVAQALSA
IGQIPAPVLVIPGNHDHGGPGSLWHQGWFQELSADVAPNLQILLERQPVSLCGAVVLPCPLMRQTAVEDPLSWLTQLNTS
ELPDGPRIVLAHGSVQSFAALDSQEASSNQLSLEQLPQGLCDYIALGDWHGLKQVSANAWYCGCPEQDRFPRTADYASSQ
VLLVELERGCSPAVSIEPTGALQWHHITMRLQGDADLELLERQVQQHLGQRSGEDLLLLELDGQLSLTGAARLEAWLTSL
SSRLLRLKHRQRVRTLPSDAELAPLLDRPGDPLFARVVSSLKEQSLQQDNAEESRLAVLALRELQLLASQEI
>Mature_392_residues
MFGVLRLVRFLHTADWQIGKPYARVVDPDHRARLKQVRIAVIQRMALFVQRQQLDFVLVAGDLFDSPAPARSEVAQALSA
IGQIPAPVLVIPGNHDHGGPGSLWHQGWFQELSADVAPNLQILLERQPVSLCGAVVLPCPLMRQTAVEDPLSWLTQLNTS
ELPDGPRIVLAHGSVQSFAALDSQEASSNQLSLEQLPQGLCDYIALGDWHGLKQVSANAWYCGCPEQDRFPRTADYASSQ
VLLVELERGCSPAVSIEPTGALQWHHITMRLQGDADLELLERQVQQHLGQRSGEDLLLLELDGQLSLTGAARLEAWLTSL
SSRLLRLKHRQRVRTLPSDAELAPLLDRPGDPLFARVVSSLKEQSLQQDNAEESRLAVLALRELQLLASQEI

Specific function: Sbccd Cleaves DNA Hairpin Structures. These Structures Can Inhibit DNA Replication And Are Intermediates In Certain DNA Recombination Reactions. The Complex Acts As A 3'->5' Double Strand Exonuclease That Can Open Hairpins. It Also Has A 5' Single-Strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43322; Mature: 43322

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGVLRLVRFLHTADWQIGKPYARVVDPDHRARLKQVRIAVIQRMALFVQRQQLDFVLVA
CHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
GDLFDSPAPARSEVAQALSAIGQIPAPVLVIPGNHDHGGPGSLWHQGWFQELSADVAPNL
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCE
QILLERQPVSLCGAVVLPCPLMRQTAVEDPLSWLTQLNTSELPDGPRIVLAHGSVQSFAA
EEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH
LDSQEASSNQLSLEQLPQGLCDYIALGDWHGLKQVSANAWYCGCPEQDRFPRTADYASSQ
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCC
VLLVELERGCSPAVSIEPTGALQWHHITMRLQGDADLELLERQVQQHLGQRSGEDLLLLE
EEEEEECCCCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
LDGQLSLTGAARLEAWLTSLSSRLLRLKHRQRVRTLPSDAELAPLLDRPGDPLFARVVSS
ECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHH
LKEQSLQQDNAEESRLAVLALRELQLLASQEI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFGVLRLVRFLHTADWQIGKPYARVVDPDHRARLKQVRIAVIQRMALFVQRQQLDFVLVA
CHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
GDLFDSPAPARSEVAQALSAIGQIPAPVLVIPGNHDHGGPGSLWHQGWFQELSADVAPNL
CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCE
QILLERQPVSLCGAVVLPCPLMRQTAVEDPLSWLTQLNTSELPDGPRIVLAHGSVQSFAA
EEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH
LDSQEASSNQLSLEQLPQGLCDYIALGDWHGLKQVSANAWYCGCPEQDRFPRTADYASSQ
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCC
VLLVELERGCSPAVSIEPTGALQWHHITMRLQGDADLELLERQVQQHLGQRSGEDLLLLE
EEEEEECCCCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
LDGQLSLTGAARLEAWLTSLSSRLLRLKHRQRVRTLPSDAELAPLLDRPGDPLFARVVSS
ECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHH
LKEQSLQQDNAEESRLAVLALRELQLLASQEI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA