| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242236
Identifier: 148242236
GI number: 148242236
Start: 1003794
End: 1004960
Strand: Direct
Name: 148242236
Synonym: SynRCC307_1137
Alternate gene names: NA
Gene position: 1003794-1004960 (Clockwise)
Preceding gene: 148242234
Following gene: 148242239
Centisome position: 45.12
GC content: 64.01
Gene sequence:
>1167_bases ATGGCCATGCCCGCTATCAGCGGCAGCCAGCGGCTCTGCAGAATTGAGGCACCACTGACAGATGGCGTGGCGGTAAGCGG AGCCCAACCGGCATATCAGAACTGGGCTTGGTGGCCGCTGCTGCCCCTATACCCCTTTGGCCGCAGGCGCACGTTGCGCC GTGAGCTGGTGCCTGGTCACATCTGGAGCTTTGAGCAGCTCCAAGGGGTGTTTTTCGTGGCCGTGCCCATCCGCATGACT GCGGTGAAGCTCAAGGCTGGCTTGTTGCTGTATGCCCCAGTGGCTGCCACAGCCGAGTGCATCGCCCTGGTGCGCGAGCT GGAAGCTGAGCATGGGCCTGTGGTGAGCATCGTGCATCCCACCAGTTCCGGCCTGGAGCACAAAGTGGGCGTGCCAGCGA TGGCGCGGGCGTTTCCAAGCGCCGATGTGTGGGTTACGCCGGGGCAGTGGAGCTTTCCGCTGCCGCTACCGCTCAGCTGG CTCGGCTTCCCTGCACGCCGCACCAAGGTGCTGTTCGACGATGGGGTGCCCCATGGCGACGAACTGCATTGGGAGCAGCT TGGTCCCTTGCCCCTGGGGCCTGGCCCTTTTTGTGAGGCCACCATGTTGCATCGCGCCAGTGGCACCTTGCTCTGCACCG ATGGCTTAATCGCCGTGTCCGAGCGCTGGCCCGAGCTCTTGGATCTCGCCCCCAAGCCGCTGCTGTATCACGGCCGCAAC GACGGCACAGAACCCATGGACGACTGCCCGCAACGTCGCTTGCGGGGGTGGAAACGTCTGGTGCTGTTTGCCACCTGCCT CAAGCCGCAGGCTGTTGAGCAGGTGTGGAGGCGCTTCCCTTTTCGTTGGCGCAGCGGCTGGGAGCAGGATTTTGCAGCGA TCAGCCGTGGTGGGCAGCTGCGCGTGGCGCCAATCCTCGAGGATCTGGTGTTTCCGCGGCAGCGCCCCTTGATGGCCCAG TGGCTGCGGCGCTGCGCTCAATTGCCGGTTAGGCGGCTTGTGCCCGCCCATTTCGATGCACCCATTGCCTGCACGCCAGA GCAACTCAACGCCTTAGCCGATGCCTGGGAGCAGCAGGATCAACCTGCCGCTGAGTTGCAAGACAGAGCTTTCCTGCGGG CGTTCAACCGACAAGTGGAACGCTTTGGCTTGGTGCCGAAGCCTTAG
Upstream 100 bases:
>100_bases TCACAGCCTCGGCCACCCAAGCCGGTGGATCGCTGTAGGCCGTATCTGCCGGCAATGCTGCTGAACCCGCTGCCTTCTCG CTAGCAAGTCACCAAGGCAA
Downstream 100 bases:
>100_bases AGATCGATGGGCTCGTCGCCGTCGGGGCCAAACACAGCGCCTTCGAGTTCCATGCGCTGCTCCATCTGCCGCAGGAAGTA GCCCGTCATCATCGCGGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MAMPAISGSQRLCRIEAPLTDGVAVSGAQPAYQNWAWWPLLPLYPFGRRRTLRRELVPGHIWSFEQLQGVFFVAVPIRMT AVKLKAGLLLYAPVAATAECIALVRELEAEHGPVVSIVHPTSSGLEHKVGVPAMARAFPSADVWVTPGQWSFPLPLPLSW LGFPARRTKVLFDDGVPHGDELHWEQLGPLPLGPGPFCEATMLHRASGTLLCTDGLIAVSERWPELLDLAPKPLLYHGRN DGTEPMDDCPQRRLRGWKRLVLFATCLKPQAVEQVWRRFPFRWRSGWEQDFAAISRGGQLRVAPILEDLVFPRQRPLMAQ WLRRCAQLPVRRLVPAHFDAPIACTPEQLNALADAWEQQDQPAAELQDRAFLRAFNRQVERFGLVPKP
Sequences:
>Translated_388_residues MAMPAISGSQRLCRIEAPLTDGVAVSGAQPAYQNWAWWPLLPLYPFGRRRTLRRELVPGHIWSFEQLQGVFFVAVPIRMT AVKLKAGLLLYAPVAATAECIALVRELEAEHGPVVSIVHPTSSGLEHKVGVPAMARAFPSADVWVTPGQWSFPLPLPLSW LGFPARRTKVLFDDGVPHGDELHWEQLGPLPLGPGPFCEATMLHRASGTLLCTDGLIAVSERWPELLDLAPKPLLYHGRN DGTEPMDDCPQRRLRGWKRLVLFATCLKPQAVEQVWRRFPFRWRSGWEQDFAAISRGGQLRVAPILEDLVFPRQRPLMAQ WLRRCAQLPVRRLVPAHFDAPIACTPEQLNALADAWEQQDQPAAELQDRAFLRAFNRQVERFGLVPKP >Mature_387_residues AMPAISGSQRLCRIEAPLTDGVAVSGAQPAYQNWAWWPLLPLYPFGRRRTLRRELVPGHIWSFEQLQGVFFVAVPIRMTA VKLKAGLLLYAPVAATAECIALVRELEAEHGPVVSIVHPTSSGLEHKVGVPAMARAFPSADVWVTPGQWSFPLPLPLSWL GFPARRTKVLFDDGVPHGDELHWEQLGPLPLGPGPFCEATMLHRASGTLLCTDGLIAVSERWPELLDLAPKPLLYHGRND GTEPMDDCPQRRLRGWKRLVLFATCLKPQAVEQVWRRFPFRWRSGWEQDFAAISRGGQLRVAPILEDLVFPRQRPLMAQW LRRCAQLPVRRLVPAHFDAPIACTPEQLNALADAWEQQDQPAAELQDRAFLRAFNRQVERFGLVPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43622; Mature: 43491
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMPAISGSQRLCRIEAPLTDGVAVSGAQPAYQNWAWWPLLPLYPFGRRRTLRRELVPGH CCCCCCCCCCCEEEEECCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC IWSFEQLQGVFFVAVPIRMTAVKLKAGLLLYAPVAATAECIALVRELEAEHGPVVSIVHP CCCHHHHCCEEEEEECHHHEEHHHHCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECC TSSGLEHKVGVPAMARAFPSADVWVTPGQWSFPLPLPLSWLGFPARRTKVLFDDGVPHGD CCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCHHEEEEEECCCCCCC ELHWEQLGPLPLGPGPFCEATMLHRASGTLLCTDGLIAVSERWPELLDLAPKPLLYHGRN CCCHHHCCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEHHHHCHHHHHCCCCCEEEECCC DGTEPMDDCPQRRLRGWKRLVLFATCLKPQAVEQVWRRFPFRWRSGWEQDFAAISRGGQL CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHCCCHHHHHHHHHCCCCE RVAPILEDLVFPRQRPLMAQWLRRCAQLPVRRLVPAHFDAPIACTPEQLNALADAWEQQD EEHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCEECHHHHHHHHHHHHHCC QPAAELQDRAFLRAFNRQVERFGLVPKP CCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AMPAISGSQRLCRIEAPLTDGVAVSGAQPAYQNWAWWPLLPLYPFGRRRTLRRELVPGH CCCCCCCCCCEEEEECCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC IWSFEQLQGVFFVAVPIRMTAVKLKAGLLLYAPVAATAECIALVRELEAEHGPVVSIVHP CCCHHHHCCEEEEEECHHHEEHHHHCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECC TSSGLEHKVGVPAMARAFPSADVWVTPGQWSFPLPLPLSWLGFPARRTKVLFDDGVPHGD CCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCHHEEEEEECCCCCCC ELHWEQLGPLPLGPGPFCEATMLHRASGTLLCTDGLIAVSERWPELLDLAPKPLLYHGRN CCCHHHCCCCCCCCCCCHHHHHHHHCCCCEEEECCEEEHHHHCHHHHHCCCCCEEEECCC DGTEPMDDCPQRRLRGWKRLVLFATCLKPQAVEQVWRRFPFRWRSGWEQDFAAISRGGQL CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHCCCHHHHHHHHHCCCCE RVAPILEDLVFPRQRPLMAQWLRRCAQLPVRRLVPAHFDAPIACTPEQLNALADAWEQQD EEHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCEECHHHHHHHHHHHHHCC QPAAELQDRAFLRAFNRQVERFGLVPKP CCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA