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The map label for this gene is rsmE [H]

Identifier: 148242227

GI number: 148242227

Start: 995665

End: 996375

Strand: Direct

Name: rsmE [H]

Synonym: SynRCC307_1128

Alternate gene names: 148242227

Gene position: 995665-996375 (Clockwise)

Preceding gene: 148242220

Following gene: 148242233

Centisome position: 44.75

GC content: 62.59

Gene sequence:

>711_bases
ATGAATTTGATCCTGCTGCAGCCTGACGATGCCTGGATCAGCGCTGATCAGGTGCGATTGGTTGGCCGCCGCGCCGATCA
CATTCGCCAGCAGCTCAAAGCCGTTCTGGGGCAAACCGTTCGCGTTGGCCTGATGGGCGGTCCTCAAGGCACAGCCGAGA
TCACTGCACTCGATGCCGATGCTGTTGTGCTGTCGGTGGCGTTGGATCAGCCGCCGCCACCACGCCATCGTTTCGACGTG
GTGCTGGCCTTGCCTCGCCCCAAAATGCTGCGCCGCATTTTTCGCACTGCCGCTGAATTTGGCGTTGGCCAGTTGCACTT
GATCAACAGTGCGCGTGTTGAGAAGAGCTTTTGGCAAACGCCACTGTTGAAGCCGGCCAAGGTGGCGGAGGCGTTGCAGG
CCGGCATGGAGCGCGCGCGAGACACGATCGCTCCGCAGGTTCATCTCCACCAGCGCTTCCGTCCTTTTGTGGAAGACGAG
CTCTCTGCACTCTGCGCTGGCCGGCCTTGCTGGATCACCGATCAAGGGGCGCCCTTGGCGCTCGCTTCAGCGCCAGCCGG
CCATGCCGTGGTGATGGTGGGCCCCGAGGGCGGGTTTGTGCCCTTTGAAATTGAGCTGGCCTGCTCTGTGGTGGCCCAGC
GTGTTCATCTCGGTGAGCGCACCCTCAGCGTCGATACGGCCCTCACAGCAACCCTGGCATTGGGCGCGTAG

Upstream 100 bases:

>100_bases
TGACTAGGCCTCCAGTGATGAAGATCAGCAAGGCCCAATGGAACTCCTGCATCGGCAGATCTGATCAAGCCGTTTCCATC
CTTACGCTGCGGCTGGCGCC

Downstream 100 bases:

>100_bases
CCAGCCGTCAGGCTGCCTTGAGATCCACCGGCCGGTAGGGCACAAAGCTTGATTTGCGAGCTCCGCAGATGGTGCAGACC
CAGTCTTCGGGGATGTCTTC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNLILLQPDDAWISADQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDADAVVLSVALDQPPPPRHRFDV
VLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQTPLLKPAKVAEALQAGMERARDTIAPQVHLHQRFRPFVEDE
LSALCAGRPCWITDQGAPLALASAPAGHAVVMVGPEGGFVPFEIELACSVVAQRVHLGERTLSVDTALTATLALGA

Sequences:

>Translated_236_residues
MNLILLQPDDAWISADQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDADAVVLSVALDQPPPPRHRFDV
VLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQTPLLKPAKVAEALQAGMERARDTIAPQVHLHQRFRPFVEDE
LSALCAGRPCWITDQGAPLALASAPAGHAVVMVGPEGGFVPFEIELACSVVAQRVHLGERTLSVDTALTATLALGA
>Mature_236_residues
MNLILLQPDDAWISADQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDADAVVLSVALDQPPPPRHRFDV
VLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQTPLLKPAKVAEALQAGMERARDTIAPQVHLHQRFRPFVEDE
LSALCAGRPCWITDQGAPLALASAPAGHAVVMVGPEGGFVPFEIELACSVVAQRVHLGERTLSVDTALTATLALGA

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25467; Mature: 25467

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLILLQPDDAWISADQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDAD
CEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCC
AVVLSVALDQPPPPRHRFDVVLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQT
EEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC
PLLKPAKVAEALQAGMERARDTIAPQVHLHQRFRPFVEDELSALCAGRPCWITDQGAPLA
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEE
LASAPAGHAVVMVGPEGGFVPFEIELACSVVAQRVHLGERTLSVDTALTATLALGA
EECCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCC
>Mature Secondary Structure
MNLILLQPDDAWISADQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDAD
CEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCC
AVVLSVALDQPPPPRHRFDVVLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQT
EEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC
PLLKPAKVAEALQAGMERARDTIAPQVHLHQRFRPFVEDELSALCAGRPCWITDQGAPLA
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEE
LASAPAGHAVVMVGPEGGFVPFEIELACSVVAQRVHLGERTLSVDTALTATLALGA
EECCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]