| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148242118
Identifier: 148242118
GI number: 148242118
Start: 932938
End: 933852
Strand: Direct
Name: 148242118
Synonym: SynRCC307_1019
Alternate gene names: NA
Gene position: 932938-933852 (Clockwise)
Preceding gene: 148242112
Following gene: 148242119
Centisome position: 41.93
GC content: 62.3
Gene sequence:
>915_bases ATGGGCCGCAGCCTGGCCGTGCTTCTTGCTCTCGCCGGTGCGGTGGTTGGCGCGGCTGCCCTGTGGCCACTGCCCCAGGA GCCGGAGCCGCTGAGTTGGGACCCTCCGCCAGAGCTAATCCCCCCCCAACCCATTGTTCTGCCACCGGCGCGTGAGCAGC TGGTGGAGTTTCTACCGGATCAGAGCATCCGACTGTTGCGCCCGACTGGCAGAGAGATCACGGTGCGTTACTCCGCTGTG GTGGCCGATCCTCGATGGGTTGATTTGGCCTTTTACGGCGGTTGGGAGCGGGAACTGGAAGCCAATGAAGACAGCAGTGC TTTGGCCTTTGTCACAGGGCCCACCTATGAGCGGCAGCAGGGATTCAACGATTTAGGGATCGCCCTGCACGGAGATCTGG TGCTGGCCAATGGCCAGTGGGATGCCGGCAACCGCGCCGCTGCCCGTCAGCGCGCCTACTGGGCAATTACCACGGGTGGT GAGCTGGAGTTTGGCTATGGGCGACTGCCCCGGGAAGACTCCAGCCGCTACCGGATCTTTGTGGGCGGCTTGCATGCGTT CCACCACAGCGAGGCTGTGCCGCCTGAGAGCTACAAGGGCGTTTATCAAGGCATGACCTTGGCGGATGTGCGCATCGTCT ATGCCTGGCGAGACGATGGCCGCTTGGAGCTGCTGGAAACAGCGGATGGACTGCTGTTTAGCGATCTGGAGTTGCTGGTG AAAGCCCGCGGTTTCCGCGCCGCTTATTTGCCTGATCACGCCTCAAAATCACGGCTGATCATTCCTGGTCAGAAGTTGTG GAGTGACGAGCAGGCCCTCTGGGTGAGCGGGGGCCGCCTCGACATCATCCCGCTGCCCTTCATGCTGAAGCTGCAACCCA GCCGCGCTTGGTATGAGGCCTCCAATCGGCTCTGA
Upstream 100 bases:
>100_bases GGTGCGATCGAGCCCTTGCAACAGCTGTTGAAAGCGCCGCATTAGCCGCTGCAGATCACTGAGATCTCACCACAATGAAA CGAGCAACCGCGTTGGGGTG
Downstream 100 bases:
>100_bases ATTTCGGCTTTATTTCGAGCGCACCCTTGGCGTGGGGTGTGGGGTGGGTGTTGTGCTGGCGCTGCCTGGTGTGCTGTTGG CGCTACTGGTGCTGTTCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MGRSLAVLLALAGAVVGAAALWPLPQEPEPLSWDPPPELIPPQPIVLPPAREQLVEFLPDQSIRLLRPTGREITVRYSAV VADPRWVDLAFYGGWERELEANEDSSALAFVTGPTYERQQGFNDLGIALHGDLVLANGQWDAGNRAAARQRAYWAITTGG ELEFGYGRLPREDSSRYRIFVGGLHAFHHSEAVPPESYKGVYQGMTLADVRIVYAWRDDGRLELLETADGLLFSDLELLV KARGFRAAYLPDHASKSRLIIPGQKLWSDEQALWVSGGRLDIIPLPFMLKLQPSRAWYEASNRL
Sequences:
>Translated_304_residues MGRSLAVLLALAGAVVGAAALWPLPQEPEPLSWDPPPELIPPQPIVLPPAREQLVEFLPDQSIRLLRPTGREITVRYSAV VADPRWVDLAFYGGWERELEANEDSSALAFVTGPTYERQQGFNDLGIALHGDLVLANGQWDAGNRAAARQRAYWAITTGG ELEFGYGRLPREDSSRYRIFVGGLHAFHHSEAVPPESYKGVYQGMTLADVRIVYAWRDDGRLELLETADGLLFSDLELLV KARGFRAAYLPDHASKSRLIIPGQKLWSDEQALWVSGGRLDIIPLPFMLKLQPSRAWYEASNRL >Mature_303_residues GRSLAVLLALAGAVVGAAALWPLPQEPEPLSWDPPPELIPPQPIVLPPAREQLVEFLPDQSIRLLRPTGREITVRYSAVV ADPRWVDLAFYGGWERELEANEDSSALAFVTGPTYERQQGFNDLGIALHGDLVLANGQWDAGNRAAARQRAYWAITTGGE LEFGYGRLPREDSSRYRIFVGGLHAFHHSEAVPPESYKGVYQGMTLADVRIVYAWRDDGRLELLETADGLLFSDLELLVK ARGFRAAYLPDHASKSRLIIPGQKLWSDEQALWVSGGRLDIIPLPFMLKLQPSRAWYEASNRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33850; Mature: 33719
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRSLAVLLALAGAVVGAAALWPLPQEPEPLSWDPPPELIPPQPIVLPPAREQLVEFLPD CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCC QSIRLLRPTGREITVRYSAVVADPRWVDLAFYGGWERELEANEDSSALAFVTGPTYERQQ CCEEEECCCCCEEEEEEEEEEECCCEEEEEEECCCCEEECCCCCCCEEEEEECCCHHHHC GFNDLGIALHGDLVLANGQWDAGNRAAARQRAYWAITTGGELEFGYGRLPREDSSRYRIF CCCCCCEEEECCEEEECCCCCCCCHHHHHCCEEEEEEECCEEEECCCCCCCCCCCCEEEE VGGLHAFHHSEAVPPESYKGVYQGMTLADVRIVYAWRDDGRLELLETADGLLFSDLELLV EECEEHHHCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHH KARGFRAAYLPDHASKSRLIIPGQKLWSDEQALWVSGGRLDIIPLPFMLKLQPSRAWYEA HHCCCEEEECCCCCCCCEEEECCHHHCCCCCEEEEECCEEEEEECCEEEEECCCCHHHHH SNRL CCCC >Mature Secondary Structure GRSLAVLLALAGAVVGAAALWPLPQEPEPLSWDPPPELIPPQPIVLPPAREQLVEFLPD CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCC QSIRLLRPTGREITVRYSAVVADPRWVDLAFYGGWERELEANEDSSALAFVTGPTYERQQ CCEEEECCCCCEEEEEEEEEEECCCEEEEEEECCCCEEECCCCCCCEEEEEECCCHHHHC GFNDLGIALHGDLVLANGQWDAGNRAAARQRAYWAITTGGELEFGYGRLPREDSSRYRIF CCCCCCEEEECCEEEECCCCCCCCHHHHHCCEEEEEEECCEEEECCCCCCCCCCCCEEEE VGGLHAFHHSEAVPPESYKGVYQGMTLADVRIVYAWRDDGRLELLETADGLLFSDLELLV EECEEHHHCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHH KARGFRAAYLPDHASKSRLIIPGQKLWSDEQALWVSGGRLDIIPLPFMLKLQPSRAWYEA HHCCCEEEECCCCCCCCEEEECCHHHCCCCCEEEEECCEEEEEECCEEEEECCCCHHHHH SNRL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA