Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148241961

Identifier: 148241961

GI number: 148241961

Start: 782428

End: 783426

Strand: Direct

Name: 148241961

Synonym: SynRCC307_0862

Alternate gene names: NA

Gene position: 782428-783426 (Clockwise)

Preceding gene: 148241960

Following gene: 148241966

Centisome position: 35.17

GC content: 63.36

Gene sequence:

>999_bases
TTGATTCCGCTTCTTGCCCCTTGCCCATTGGAGGCTGGATGGGAGTTGATCTGGCAGCAGAGCTTGCCCAACCCAGCCGC
TGATCAGCGCTTGGGTGGTTTCTCTGGGATGGCGCTCGATTGGCCGCGGCGGCGCCTGTGGCTGCTTAGCGATGCCAAGC
GCACCCACAGCCTTGAGCTGCGCTGGGATGGAACCGTGCGCCAGCCCTTGCTATCGGCGCAGGCTCCCCAGCCGTTGCAG
GGGCAAGGCCGCCAGAAGTTGGATGGTGAAGCGCTGGTGCGCACACCCGGGGGTAGTCCGGAGCGGTTTTGGATGGCCAG
TGAAGCCCGTAACCCCCAAAAGCGACCAGCCTCCCTGTTGGAGCTGAAGCTGCTCCGCTCCGGTGGCTTTGCCATCCAGC
AGCAATGGCCGTTGCCCGCCGAGTGGCAACCACAGCAGGGTCAAGGCATGCGCCGCAACAAAGGGCCCGAGGCCCTGGTT
GCCTTGCCGGCGCTGCGTTTTTTGCTCGCAGCGGAGGCTCCATTGCAACAGGATTCATCGCGCCAATTGCGCCTGCTGCT
GGCTAAGCAGCAGGGCCAGCAGATGCAATTCACCCCCCTGGGAACACCGCTGCTGGTTAGTGCGCCTTTAGAAGCCCAGC
CCCATTGGGGGCTCACCGCATTGCTGCCTGCTCAGGCTGGAGAGCAGCCACCACTACTAGCCCTATGGCGTGGGTACGCC
GAGCCCAATAAATGGTGGAACCGGCTCAGCTTGCTGCCAGCGGTTCCTCTCGATCAGAAGCCAGAGCGGGCTGTGGCTCC
CTTGATGCGCTGGGATCTGCGCGATGTTGGCTTAGAGCCCGACAACTGGGAGGCGTTAACCGCTGGACCGCAACTGGAGG
ATGGACGTCCCACCCTGCTGCTAGCCAGCGATGACAATTTCAGCCCCTTCCAGCAGAACCGCTTGGCTCTGCTGGCACCC
CTGCAAACTGAAGCCTGCGCCTCAGCGGACAGCCGCTAG

Upstream 100 bases:

>100_bases
CGCAGCGCATTGCTCAGATCTTGAGTGGTGAGATGGGTTATGGCGACATTGCTCAGCGGGTGATCCGCCGGTTGGGCGGC
GGCTTGTTGGGGGCGGGACG

Downstream 100 bases:

>100_bases
GGCTGCGCCAAGACCGGCGCGCACATCTTCGGGATGGAGCTTGCCGTCGTGGTCGCGATCGAGGGCATCGAAGACGGCAT
CGCTACCGAGCCATTCCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MIPLLAPCPLEAGWELIWQQSLPNPAADQRLGGFSGMALDWPRRRLWLLSDAKRTHSLELRWDGTVRQPLLSAQAPQPLQ
GQGRQKLDGEALVRTPGGSPERFWMASEARNPQKRPASLLELKLLRSGGFAIQQQWPLPAEWQPQQGQGMRRNKGPEALV
ALPALRFLLAAEAPLQQDSSRQLRLLLAKQQGQQMQFTPLGTPLLVSAPLEAQPHWGLTALLPAQAGEQPPLLALWRGYA
EPNKWWNRLSLLPAVPLDQKPERAVAPLMRWDLRDVGLEPDNWEALTAGPQLEDGRPTLLLASDDNFSPFQQNRLALLAP
LQTEACASADSR

Sequences:

>Translated_332_residues
MIPLLAPCPLEAGWELIWQQSLPNPAADQRLGGFSGMALDWPRRRLWLLSDAKRTHSLELRWDGTVRQPLLSAQAPQPLQ
GQGRQKLDGEALVRTPGGSPERFWMASEARNPQKRPASLLELKLLRSGGFAIQQQWPLPAEWQPQQGQGMRRNKGPEALV
ALPALRFLLAAEAPLQQDSSRQLRLLLAKQQGQQMQFTPLGTPLLVSAPLEAQPHWGLTALLPAQAGEQPPLLALWRGYA
EPNKWWNRLSLLPAVPLDQKPERAVAPLMRWDLRDVGLEPDNWEALTAGPQLEDGRPTLLLASDDNFSPFQQNRLALLAP
LQTEACASADSR
>Mature_332_residues
MIPLLAPCPLEAGWELIWQQSLPNPAADQRLGGFSGMALDWPRRRLWLLSDAKRTHSLELRWDGTVRQPLLSAQAPQPLQ
GQGRQKLDGEALVRTPGGSPERFWMASEARNPQKRPASLLELKLLRSGGFAIQQQWPLPAEWQPQQGQGMRRNKGPEALV
ALPALRFLLAAEAPLQQDSSRQLRLLLAKQQGQQMQFTPLGTPLLVSAPLEAQPHWGLTALLPAQAGEQPPLLALWRGYA
EPNKWWNRLSLLPAVPLDQKPERAVAPLMRWDLRDVGLEPDNWEALTAGPQLEDGRPTLLLASDDNFSPFQQNRLALLAP
LQTEACASADSR

Specific function: Unknown

COG id: COG4222

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36930; Mature: 36930

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLLAPCPLEAGWELIWQQSLPNPAADQRLGGFSGMALDWPRRRLWLLSDAKRTHSLEL
CCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCCCCCEECCCCCEEEEEECCCCCEEEEE
RWDGTVRQPLLSAQAPQPLQGQGRQKLDGEALVRTPGGSPERFWMASEARNPQKRPASLL
EECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEHHHCCCCCCCCHHHH
ELKLLRSGGFAIQQQWPLPAEWQPQQGQGMRRNKGPEALVALPALRFLLAAEAPLQQDSS
HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
RQLRLLLAKQQGQQMQFTPLGTPLLVSAPLEAQPHWGLTALLPAQAGEQPPLLALWRGYA
HHHHHHEEHHCCCEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEHHHHCCC
EPNKWWNRLSLLPAVPLDQKPERAVAPLMRWDLRDVGLEPDNWEALTAGPQLEDGRPTLL
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEE
LASDDNFSPFQQNRLALLAPLQTEACASADSR
EECCCCCCCHHHCCEEEEECCCHHHHHCCCCC
>Mature Secondary Structure
MIPLLAPCPLEAGWELIWQQSLPNPAADQRLGGFSGMALDWPRRRLWLLSDAKRTHSLEL
CCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCCCCCEECCCCCEEEEEECCCCCEEEEE
RWDGTVRQPLLSAQAPQPLQGQGRQKLDGEALVRTPGGSPERFWMASEARNPQKRPASLL
EECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEHHHCCCCCCCCHHHH
ELKLLRSGGFAIQQQWPLPAEWQPQQGQGMRRNKGPEALVALPALRFLLAAEAPLQQDSS
HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
RQLRLLLAKQQGQQMQFTPLGTPLLVSAPLEAQPHWGLTALLPAQAGEQPPLLALWRGYA
HHHHHHEEHHCCCEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEHHHHCCC
EPNKWWNRLSLLPAVPLDQKPERAVAPLMRWDLRDVGLEPDNWEALTAGPQLEDGRPTLL
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEE
LASDDNFSPFQQNRLALLAPLQTEACASADSR
EECCCCCCCHHHCCEEEEECCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA