| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241904
Identifier: 148241904
GI number: 148241904
Start: 735476
End: 736819
Strand: Direct
Name: 148241904
Synonym: SynRCC307_0805
Alternate gene names: NA
Gene position: 735476-736819 (Clockwise)
Preceding gene: 148241902
Following gene: 148241905
Centisome position: 33.06
GC content: 59.82
Gene sequence:
>1344_bases ATGGCGAAGCGTTTCTTCTCCCAACTGCTCGATCGCTGTGAGGCCAAAGCCGAACAGCTCAAAACCCGCTGGGCCGGCCT GAGTGACCACGGCCAGGTTGGCGTTTGCCTCACCGGCGTCACCGGGGTCTTGGTGCTATGGGCCCTGTTTTGGCCGGTGC CAACCGAGGTCAAAGGCCAAGGCGTGTTGATCTTTCCCAGCAAGGCGGGATTGCTCAATGCCCGGGCGCAAGGCCAAGTT CTGGCCGTGAATGTGGAGGTGGGCGATCGGGTCAAGCAAGGCCAAGAGCTGATGTCGCTCTATTTGCCGGTTTTGGAACG GGAATTGGCGCAGCAGCGGGGCAACTTGCTGCAGCTCGAAGCCATCAACCGCGAGCTCAATGAGCGTGATGCCCGTCGCT TGGAGACTGAAAAGGCCGCCGTGGATGTGGCCCTCGCCAAATTCGATGACGATCTCGACCGCTACAGCCGCCTGCAAGCG ACCTATGGCAACAAGCTGAACAACCTCGAATGGCTCAGTTCACGCCAGGTGGTAGCCCCGCTGTCCCGTGAGGTGGTTTC AGCTGAGCAGGGTCTGACCAATACCAGCGTCAGCCTTGATGACGTCACGATTCAGCGCAAGCGGGTGTTGACGGCTTATC AGCAGGTGAAGCTCGACATTGAAACCGAAGCGCTCGAGCGGCAATTCGCCATTGGTGATCTCAAGCGCAAGATCAGCGTC ACCGAAGCCCAGATCGCTTACGACGGCAAGGTCATGGCTGGACGTGATGGCGTCATGATTGATCTTCAGGTGATCCCAGG TCAGACGGTCAAAGTCAGCGACCGCTTGGGAACCATCTTGGGATCGTCTGAGGCCGGAGAAAGCAAGGCTCCCCAGCTCA ATGCCGTGGCCTATTTCAAGCCTGCTGATGCGCGCCGTCTACCGCTGGGCTTACCCGTGGAGGTGGTTCCTGATTGGCAG CAGCGCGGACGCTTTGGCGGGATCGTTGGCAAGGTCACGAGCGTTCTCACCCTCCCCTCCACCGAAGACGATGTGTCCAC CACAACGGGTAACCCGCAGCTGGCCAAGGAGCTCACCAAAGATGGGCCGGTGATGCGCGCTGAAATTGGGTTGGTGCGGA GCAAAGGCAGCATGGATGGCTACCGCTGGACGCTCTCATTGGGCAGTGGTGTGTTCCCAATCCGCGAGGGCTTAACCGCC ACCACCCATGCCTATGTGGAGTGGCGCTCCCCCTTGAGTTATGTGATTCCTGGCCTGCGCTCCCTGACCGGTGGATTCCG CACCTTGCGCATCGATCGCCTCTGGAACCGCCCCTTCTTGGTTCAACCCGACACGATTGAGTGA
Upstream 100 bases:
>100_bases ATCAAGCCAAGAGGGCGCGCGATCAACAACCTGGACAAAGAGTTCGGCGGCAGTCTGGCTTGATCTGGTTGTCCTTGCCC GGATCTGAGCGTTAAACGCC
Downstream 100 bases:
>100_bases TCCAGTGACTCGACTTCCTCGCATTCGCAATCCATTGCTGCGGCGTGAACTGCCCTGGTTGGTAGCTGATGTGGTGTTGT TGCTGATTTTGTTCAATGCC
Product: membrane-fusion protein
Products: NA
Alternate protein names: Membrane-Fusion Protein; Secretion Protein HlyD Family Protein; Type I Secretion Adaptor Protein; Chromosome Segregation ATPase-Like Protein; Multidrug Resistance Efflux Pump
Number of amino acids: Translated: 447; Mature: 446
Protein sequence:
>447_residues MAKRFFSQLLDRCEAKAEQLKTRWAGLSDHGQVGVCLTGVTGVLVLWALFWPVPTEVKGQGVLIFPSKAGLLNARAQGQV LAVNVEVGDRVKQGQELMSLYLPVLERELAQQRGNLLQLEAINRELNERDARRLETEKAAVDVALAKFDDDLDRYSRLQA TYGNKLNNLEWLSSRQVVAPLSREVVSAEQGLTNTSVSLDDVTIQRKRVLTAYQQVKLDIETEALERQFAIGDLKRKISV TEAQIAYDGKVMAGRDGVMIDLQVIPGQTVKVSDRLGTILGSSEAGESKAPQLNAVAYFKPADARRLPLGLPVEVVPDWQ QRGRFGGIVGKVTSVLTLPSTEDDVSTTTGNPQLAKELTKDGPVMRAEIGLVRSKGSMDGYRWTLSLGSGVFPIREGLTA TTHAYVEWRSPLSYVIPGLRSLTGGFRTLRIDRLWNRPFLVQPDTIE
Sequences:
>Translated_447_residues MAKRFFSQLLDRCEAKAEQLKTRWAGLSDHGQVGVCLTGVTGVLVLWALFWPVPTEVKGQGVLIFPSKAGLLNARAQGQV LAVNVEVGDRVKQGQELMSLYLPVLERELAQQRGNLLQLEAINRELNERDARRLETEKAAVDVALAKFDDDLDRYSRLQA TYGNKLNNLEWLSSRQVVAPLSREVVSAEQGLTNTSVSLDDVTIQRKRVLTAYQQVKLDIETEALERQFAIGDLKRKISV TEAQIAYDGKVMAGRDGVMIDLQVIPGQTVKVSDRLGTILGSSEAGESKAPQLNAVAYFKPADARRLPLGLPVEVVPDWQ QRGRFGGIVGKVTSVLTLPSTEDDVSTTTGNPQLAKELTKDGPVMRAEIGLVRSKGSMDGYRWTLSLGSGVFPIREGLTA TTHAYVEWRSPLSYVIPGLRSLTGGFRTLRIDRLWNRPFLVQPDTIE >Mature_446_residues AKRFFSQLLDRCEAKAEQLKTRWAGLSDHGQVGVCLTGVTGVLVLWALFWPVPTEVKGQGVLIFPSKAGLLNARAQGQVL AVNVEVGDRVKQGQELMSLYLPVLERELAQQRGNLLQLEAINRELNERDARRLETEKAAVDVALAKFDDDLDRYSRLQAT YGNKLNNLEWLSSRQVVAPLSREVVSAEQGLTNTSVSLDDVTIQRKRVLTAYQQVKLDIETEALERQFAIGDLKRKISVT EAQIAYDGKVMAGRDGVMIDLQVIPGQTVKVSDRLGTILGSSEAGESKAPQLNAVAYFKPADARRLPLGLPVEVVPDWQQ RGRFGGIVGKVTSVLTLPSTEDDVSTTTGNPQLAKELTKDGPVMRAEIGLVRSKGSMDGYRWTLSLGSGVFPIREGLTAT THAYVEWRSPLSYVIPGLRSLTGGFRTLRIDRLWNRPFLVQPDTIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49320; Mature: 49189
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRFFSQLLDRCEAKAEQLKTRWAGLSDHGQVGVCLTGVTGVLVLWALFWPVPTEVKGQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCC GVLIFPSKAGLLNARAQGQVLAVNVEVGDRVKQGQELMSLYLPVLERELAQQRGNLLQLE EEEEECCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEH AINRELNERDARRLETEKAAVDVALAKFDDDLDRYSRLQATYGNKLNNLEWLSSRQVVAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHH LSREVVSAEQGLTNTSVSLDDVTIQRKRVLTAYQQVKLDIETEALERQFAIGDLKRKISV HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHH TEAQIAYDGKVMAGRDGVMIDLQVIPGQTVKVSDRLGTILGSSEAGESKAPQLNAVAYFK EEEEEEECCEEEECCCCEEEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEEEEEC PADARRLPLGLPVEVVPDWQQRGRFGGIVGKVTSVLTLPSTEDDVSTTTGNPQLAKELTK CCCCCCCCCCCCCEECCCHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHC DGPVMRAEIGLVRSKGSMDGYRWTLSLGSGVFPIREGLTATTHAYVEWRSPLSYVIPGLR CCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHCCCCCCEEEEEEECCCHHHHCCCHH SLTGGFRTLRIDRLWNRPFLVQPDTIE HHCCCCEEEEEEHHCCCCEECCCCCCC >Mature Secondary Structure AKRFFSQLLDRCEAKAEQLKTRWAGLSDHGQVGVCLTGVTGVLVLWALFWPVPTEVKGQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCC GVLIFPSKAGLLNARAQGQVLAVNVEVGDRVKQGQELMSLYLPVLERELAQQRGNLLQLE EEEEECCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEH AINRELNERDARRLETEKAAVDVALAKFDDDLDRYSRLQATYGNKLNNLEWLSSRQVVAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHH LSREVVSAEQGLTNTSVSLDDVTIQRKRVLTAYQQVKLDIETEALERQFAIGDLKRKISV HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHH TEAQIAYDGKVMAGRDGVMIDLQVIPGQTVKVSDRLGTILGSSEAGESKAPQLNAVAYFK EEEEEEECCEEEECCCCEEEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEEEEEC PADARRLPLGLPVEVVPDWQQRGRFGGIVGKVTSVLTLPSTEDDVSTTTGNPQLAKELTK CCCCCCCCCCCCCEECCCHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHC DGPVMRAEIGLVRSKGSMDGYRWTLSLGSGVFPIREGLTATTHAYVEWRSPLSYVIPGLR CCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHCCCCCCEEEEEEECCCHHHHCCCHH SLTGGFRTLRIDRLWNRPFLVQPDTIE HHCCCCEEEEEEHHCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA