| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241790
Identifier: 148241790
GI number: 148241790
Start: 624088
End: 625419
Strand: Direct
Name: 148241790
Synonym: SynRCC307_0691
Alternate gene names: NA
Gene position: 624088-625419 (Clockwise)
Preceding gene: 148241789
Following gene: 148241791
Centisome position: 28.05
GC content: 58.86
Gene sequence:
>1332_bases TTGAGGCCTTCCGTTTGGGAACCTTCCACCCTTTGTCTGATGGTTAGCGCAGAATCTTGGGGAAAAGCCCTTCGCCGGGA CATCAAAAACGAGTACGGGCCTGGCTGGAGCGTTAGCGCACAATCCGGCAAAACCAAACTGACCAGGCGTTACGCAGACG GCACGCGAAGCAGCGTGATGATCGAGATCCCTTTTTCGAGCGGCCACAAGCGGGAACTGCTTATCGCCATTGGCACCCAT GCAGAGCAGATGGCTGAACAGCAAATCAGCCTGAAGGAAAGCCGCAAACGCACAGCTGTCACTGCTGCCAATCCAGAAGG GGTGTTCGTTTGGGATGAGGCTGCAAAGGCCTTCTACGAGACCCGCAAAGACCTTGGGCCGGTGACTCAGAGGAACACCG TCACCCGCATTGAAAAGGCGCTGGATTCGCTCAATCGCAAGCCAAGACCAAAGGATGGGCTGGAGTTGCTCGCTGCATTT GAACGGCAGCATTTGCAGCACCTTCAGCCAGGAAGTGAGGGCCGCAAGAAATCAATTCAGGAGGTTGGCAAGTTCTTGCG TTTCTGCGTTGAGCGCCGTGGATTGGCTGGCCGATGGATGCCGCCTGTTGGTGAACAGCGCCAGGAATTGGTGGGTGCTG CCGAGGGCCGCGATGCCAAGTTGACCCCACCGCTGAAGACAGACGATTTCATCGCGCTGCTGAGCGAGCTGGAGCGACGT CGCCAGCATGGCCTTCGCCTTGCTGTTGGGCTGGTGGGGCTCTACGGCTTGAGGCCAGCTGAGTTGGCTGTGCTGAGTTT TGAAGACGGCCAGCTGAGGGTCGGCCAGGTGAAGCGCAACATGGCTGCCATCCGCAAAGGGGCCAAGCAGCAGGCCAGAG AAAACTTGCGCCTGGCGTTGCCGCTGGACCTACCAGGCCATGAAGGCCTTGGCGCTCAATTAGCGCTGCAGTGGCAATCC GGCTTGGTGAAGCTGCCCCTGCCAATCCGCACTGCAATCAAAACTGCTGAAAAAACGGGTTCCTACAAACCAGTGGGCGA TGCCTTCCGGCAGCTGCTGGATCGCCACCGTTTCTGGAAATCGCTGGTGGCCGGCAACCCTGGGCTGACCCCGTACAGCC TGCGGCATTCATTTGCCTGGCGGGCTCACAAGCAATACGACCGCCCGCTGTCAGTTCGTGATGCTGCTGCGCTGATGGGC CATGACCCCGAAACCCATTACAAGCACTACGGGCGATGGACCGATGAGGCTGGGCTGCTGGATGCAGTGAGTCGTCTGAC AGCGCAGCCTGCAAAGCCAGCTTCCCAAGCTTTTGGAGCTATAGGCGCCTGA
Upstream 100 bases:
>100_bases GTTTACGAGGAATTGACTGCATAGCCAGCTATGGCGTGCTGGGGCTCAATATGGACGTTCTGCGCTAAAAACTGCGCTAA CTTTTGGGGACTCAGGCCAG
Downstream 100 bases:
>100_bases ATGCCGGTAGCTTCATCAGCTCTCACTTTTCTCTCATGAGACTGAAAGTGCTGCTGGGTGCCGTTGTGGCGTCTGCCGCT GGACTAGCAGGCATAAAGGC
Product: Phage integrase family protein
Products: NA
Alternate protein names: Phage Integrase; Phage Integrase Family
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MRPSVWEPSTLCLMVSAESWGKALRRDIKNEYGPGWSVSAQSGKTKLTRRYADGTRSSVMIEIPFSSGHKRELLIAIGTH AEQMAEQQISLKESRKRTAVTAANPEGVFVWDEAAKAFYETRKDLGPVTQRNTVTRIEKALDSLNRKPRPKDGLELLAAF ERQHLQHLQPGSEGRKKSIQEVGKFLRFCVERRGLAGRWMPPVGEQRQELVGAAEGRDAKLTPPLKTDDFIALLSELERR RQHGLRLAVGLVGLYGLRPAELAVLSFEDGQLRVGQVKRNMAAIRKGAKQQARENLRLALPLDLPGHEGLGAQLALQWQS GLVKLPLPIRTAIKTAEKTGSYKPVGDAFRQLLDRHRFWKSLVAGNPGLTPYSLRHSFAWRAHKQYDRPLSVRDAAALMG HDPETHYKHYGRWTDEAGLLDAVSRLTAQPAKPASQAFGAIGA
Sequences:
>Translated_443_residues MRPSVWEPSTLCLMVSAESWGKALRRDIKNEYGPGWSVSAQSGKTKLTRRYADGTRSSVMIEIPFSSGHKRELLIAIGTH AEQMAEQQISLKESRKRTAVTAANPEGVFVWDEAAKAFYETRKDLGPVTQRNTVTRIEKALDSLNRKPRPKDGLELLAAF ERQHLQHLQPGSEGRKKSIQEVGKFLRFCVERRGLAGRWMPPVGEQRQELVGAAEGRDAKLTPPLKTDDFIALLSELERR RQHGLRLAVGLVGLYGLRPAELAVLSFEDGQLRVGQVKRNMAAIRKGAKQQARENLRLALPLDLPGHEGLGAQLALQWQS GLVKLPLPIRTAIKTAEKTGSYKPVGDAFRQLLDRHRFWKSLVAGNPGLTPYSLRHSFAWRAHKQYDRPLSVRDAAALMG HDPETHYKHYGRWTDEAGLLDAVSRLTAQPAKPASQAFGAIGA >Mature_443_residues MRPSVWEPSTLCLMVSAESWGKALRRDIKNEYGPGWSVSAQSGKTKLTRRYADGTRSSVMIEIPFSSGHKRELLIAIGTH AEQMAEQQISLKESRKRTAVTAANPEGVFVWDEAAKAFYETRKDLGPVTQRNTVTRIEKALDSLNRKPRPKDGLELLAAF ERQHLQHLQPGSEGRKKSIQEVGKFLRFCVERRGLAGRWMPPVGEQRQELVGAAEGRDAKLTPPLKTDDFIALLSELERR RQHGLRLAVGLVGLYGLRPAELAVLSFEDGQLRVGQVKRNMAAIRKGAKQQARENLRLALPLDLPGHEGLGAQLALQWQS GLVKLPLPIRTAIKTAEKTGSYKPVGDAFRQLLDRHRFWKSLVAGNPGLTPYSLRHSFAWRAHKQYDRPLSVRDAAALMG HDPETHYKHYGRWTDEAGLLDAVSRLTAQPAKPASQAFGAIGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49339; Mature: 49339
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSVWEPSTLCLMVSAESWGKALRRDIKNEYGPGWSVSAQSGKTKLTRRYADGTRSSVM CCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCEEE IEIPFSSGHKRELLIAIGTHAEQMAEQQISLKESRKRTAVTAANPEGVFVWDEAAKAFYE EEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHHHH TRKDLGPVTQRNTVTRIEKALDSLNRKPRPKDGLELLAAFERQHLQHLQPGSEGRKKSIQ HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH EVGKFLRFCVERRGLAGRWMPPVGEQRQELVGAAEGRDAKLTPPLKTDDFIALLSELERR HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH RQHGLRLAVGLVGLYGLRPAELAVLSFEDGQLRVGQVKRNMAAIRKGAKQQARENLRLAL HHCCHHHHHHHHHHHCCCHHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEE PLDLPGHEGLGAQLALQWQSGLVKLPLPIRTAIKTAEKTGSYKPVGDAFRQLLDRHRFWK EECCCCCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SLVAGNPGLTPYSLRHSFAWRAHKQYDRPLSVRDAAALMGHDPETHYKHYGRWTDEAGLL HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCHHHH DAVSRLTAQPAKPASQAFGAIGA HHHHHHHCCCCCHHHHHHHCCCC >Mature Secondary Structure MRPSVWEPSTLCLMVSAESWGKALRRDIKNEYGPGWSVSAQSGKTKLTRRYADGTRSSVM CCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCEEE IEIPFSSGHKRELLIAIGTHAEQMAEQQISLKESRKRTAVTAANPEGVFVWDEAAKAFYE EEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEHHHHHHHHH TRKDLGPVTQRNTVTRIEKALDSLNRKPRPKDGLELLAAFERQHLQHLQPGSEGRKKSIQ HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH EVGKFLRFCVERRGLAGRWMPPVGEQRQELVGAAEGRDAKLTPPLKTDDFIALLSELERR HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH RQHGLRLAVGLVGLYGLRPAELAVLSFEDGQLRVGQVKRNMAAIRKGAKQQARENLRLAL HHCCHHHHHHHHHHHCCCHHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEE PLDLPGHEGLGAQLALQWQSGLVKLPLPIRTAIKTAEKTGSYKPVGDAFRQLLDRHRFWK EECCCCCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SLVAGNPGLTPYSLRHSFAWRAHKQYDRPLSVRDAAALMGHDPETHYKHYGRWTDEAGLL HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCHHHH DAVSRLTAQPAKPASQAFGAIGA HHHHHHHCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA