| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241775
Identifier: 148241775
GI number: 148241775
Start: 613710
End: 614528
Strand: Direct
Name: 148241775
Synonym: SynRCC307_0676
Alternate gene names: NA
Gene position: 613710-614528 (Clockwise)
Preceding gene: 148241774
Following gene: 148241776
Centisome position: 27.58
GC content: 62.39
Gene sequence:
>819_bases ATGACCGTCGCCCCAGCCGCTCAGCTCAGCCAGGAGACCCTGGCACTCACCAAGAGGCTGTTTGTCCAGCTGCAGCGCCG CCCCTCCACCTTGGTGGCGGGTGTGCTGCAGCCGTTGATTTGGTTGGTGCTCTTTGGTGCCCTGTTCGCCAATGCTCCCG ATGGCTTGATTCCAGGGGGCGTGAGCTATGGCCGCTTCTTGGGGGCTGGGGTGATCGTCTTCACCGCCTTCAGTGCTGCC CTCAATGCCGGGCTGCCGGTGATGTTTGACCGCGAATTTGGCTTTCTCAATCGCCTGTTGGTGGCGCCCTTGCGCTCGCG CTACTCGATCGTGCTCGCCTCGGTGCTCTACATCACCAGCCTTTCACTGGTGCAGAGCCTGGCGATCATGGCGGCCGCCT GGGGCTTGGGCTATGGCTGGCCCGGTGGCGCTGGGTTGCTGGTGGTGTTGCTCACCTTGCTGCTGCTTGTCGCTGCGGTC ACCGCCCTCAGCCTGGGTTTGGCCTTTGCCCTGCCAGGCCATATCGAGTTGATCGCTGTGATCTTTGTGGCCAACCTGCC GCTGCTGTTTGCCAGCACAGCGCTGGCGCCCATCAGCTTCATGCCGTCCTGGTTGGGCTGGCTTGCAGCCTTAAATCCCC TTACCTTCGCGATTGAACCGATACGCGCGGCGTATTTGGGGCAATTCAGCCTCAATGCGGTGGTGCTGGAGGCTCCCTAT GGCTCCCTTACGGCAGCCCAGTGTCTCTCGGCTCTGCTGATCCTGTCGGCGGCTCTGTTCGTGTCCATCCGGCCTTTGTT GGACCGGAAGCTGAGCTGA
Upstream 100 bases:
>100_bases CTTGATGGATGCGGAGCTGGCTTCGGTGTCGAGCCGCGACCCCAAGGCCGAGAAAAAGCAAGCCATGCGTTGAGCTGGCC CTGTCCCCCTGTTTGCTGTC
Downstream 100 bases:
>100_bases TCTTGTGCCTGCTGTCTTTGTTTCGCCCCGCCTGCGTGAGCGTCAACTCCGGGAAGCTCTGCAAGAAGCCCTCCAACAGC AGGACGCTCAAGCGCTGCGC
Product: ABC-type multidrug transport system, ATPase component
Products: NA
Alternate protein names: Multidrug Efflux ABC Transporter; ABC-Type Multidrug Transport System Permease Component; ABC-2 Type Transporter Superfamily; ABC-2 Type Transport System Permease Protein; Daunorubicin Resistance ABC Transporter Membrane Protein; ABC-Type Multidrug Transport System ATPase Component; Multidrug ABC Transporter; ABC Transporter Permease Protein; Drug Exporter ABC Transporter Permease; Multidrug ABC Transporter Permease Component; ABC-2 Type Tranporter
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MTVAPAAQLSQETLALTKRLFVQLQRRPSTLVAGVLQPLIWLVLFGALFANAPDGLIPGGVSYGRFLGAGVIVFTAFSAA LNAGLPVMFDREFGFLNRLLVAPLRSRYSIVLASVLYITSLSLVQSLAIMAAAWGLGYGWPGGAGLLVVLLTLLLLVAAV TALSLGLAFALPGHIELIAVIFVANLPLLFASTALAPISFMPSWLGWLAALNPLTFAIEPIRAAYLGQFSLNAVVLEAPY GSLTAAQCLSALLILSAALFVSIRPLLDRKLS
Sequences:
>Translated_272_residues MTVAPAAQLSQETLALTKRLFVQLQRRPSTLVAGVLQPLIWLVLFGALFANAPDGLIPGGVSYGRFLGAGVIVFTAFSAA LNAGLPVMFDREFGFLNRLLVAPLRSRYSIVLASVLYITSLSLVQSLAIMAAAWGLGYGWPGGAGLLVVLLTLLLLVAAV TALSLGLAFALPGHIELIAVIFVANLPLLFASTALAPISFMPSWLGWLAALNPLTFAIEPIRAAYLGQFSLNAVVLEAPY GSLTAAQCLSALLILSAALFVSIRPLLDRKLS >Mature_271_residues TVAPAAQLSQETLALTKRLFVQLQRRPSTLVAGVLQPLIWLVLFGALFANAPDGLIPGGVSYGRFLGAGVIVFTAFSAAL NAGLPVMFDREFGFLNRLLVAPLRSRYSIVLASVLYITSLSLVQSLAIMAAAWGLGYGWPGGAGLLVVLLTLLLLVAAVT ALSLGLAFALPGHIELIAVIFVANLPLLFASTALAPISFMPSWLGWLAALNPLTFAIEPIRAAYLGQFSLNAVVLEAPYG SLTAAQCLSALLILSAALFVSIRPLLDRKLS
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28643; Mature: 28511
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS51012 ABC_TM2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAPAAQLSQETLALTKRLFVQLQRRPSTLVAGVLQPLIWLVLFGALFANAPDGLIPGG CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC VSYGRFLGAGVIVFTAFSAALNAGLPVMFDREFGFLNRLLVAPLRSRYSIVLASVLYITS CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSLVQSLAIMAAAWGLGYGWPGGAGLLVVLLTLLLLVAAVTALSLGLAFALPGHIELIAV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH IFVANLPLLFASTALAPISFMPSWLGWLAALNPLTFAIEPIRAAYLGQFSLNAVVLEAPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECCC GSLTAAQCLSALLILSAALFVSIRPLLDRKLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TVAPAAQLSQETLALTKRLFVQLQRRPSTLVAGVLQPLIWLVLFGALFANAPDGLIPGG CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC VSYGRFLGAGVIVFTAFSAALNAGLPVMFDREFGFLNRLLVAPLRSRYSIVLASVLYITS CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSLVQSLAIMAAAWGLGYGWPGGAGLLVVLLTLLLLVAAVTALSLGLAFALPGHIELIAV HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH IFVANLPLLFASTALAPISFMPSWLGWLAALNPLTFAIEPIRAAYLGQFSLNAVVLEAPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECCC GSLTAAQCLSALLILSAALFVSIRPLLDRKLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA