| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is topA [H]
Identifier: 148241759
GI number: 148241759
Start: 598331
End: 601024
Strand: Direct
Name: topA [H]
Synonym: SynRCC307_0660
Alternate gene names: 148241759
Gene position: 598331-601024 (Clockwise)
Preceding gene: 148241756
Following gene: 148241760
Centisome position: 26.89
GC content: 63.21
Gene sequence:
>2694_bases GTGCCCAACACCCTCGTCATCGTCGAGAGCCCCACGAAGGCCCGAACCATCCGCGGCTTCTTGCCACGCACCTTCCGCGT GGAGGCGTCGATGGGCCATGTGCGCGACCTTCCCAACAACGCCAGTGAGATCCCGGCGAGCCACAAGGCTGAGAAATGGG CCAAGACCGGCGTTAACACCGAAAAAGATTTCGAACCGCTCTATGTGGTTCCCAAAGACAAGAAAAAGATCGTCAAAGAG CTCAAGGACGCCCTCAAAGTGGCCGATGAGTTGCTGCTCGCGACTGACGAAGACCGCGAAGGGGAATCGATCAGCTGGCA CCTGCTGCAGCTTCTGAACCCCAAGGTGCCGGTCAAGCGCATGGTGTTTCACGAGATCACCGAAGAGGCGATCAAGCGCG CCTTGGGCCAAACCCGCGAGCTCAACATGGAGCTGGTGCATGCCCAAGAAACCCGGCGCATCCTCGATCGGCTGGTGGGC TACACGGTCTCACCGCTGCTCTGGAAGAAGGTGGCCTGGGGGCTCTCGGCCGGCCGCGTGCAATCGGTGGCAGTACGGCT GCTGGTGCAGCGCGAGCGGGCCCGGCGTGCCTTCCGCAGCGGCAGCTACTGGGATCTCAAGGCCCAGTTGAAGCATGAGG GCATCAGTTTTGAAGCCAAGCTCAGCCATCTCGCTGGTGAGCGCATTGCCACCGGTGGCGATTTCGATGAGAGCACCGGT GCCATCAAGGCCGGTACCAAGGTCAAGCTGCTCAGCGAAGCCGATGCCCAAGGGCTGCTGAAGGCCATCGATGGCAAAAC CTGGTCGGTGGCTGAAGTTGAGGAAAAACCCACCACCCGCCGGCCGGCACCGCCCTTCACCACCAGCACCCTGCAGCAGG AGGCCAACCGCAAACTGCGCCTTTCCGCTCGCGAAGCAATGCGCACGGCCCAGGGCCTCTATGAGCGCGGCTACATCACC TACATGCGCACCGACTCGGTGCACCTCAGCGAGCAGGCGATCACGGCGGCCCGCAGCTGCGTGTCCGATAAGTACGGAGC CGATCACCTCAGCCCTCAACCCCGGCAATACACCACCAAAAGCCGCAACGCCCAAGAGGCTCACGAGGCCATCCGGCCCG CAGGTTCCAGCTTCCGCACGCCGGCCGAATCCGGTCTCAAGGGCCTCGATCTCTCCCTCTACGAGCTGATCTGGAAGCGC ACTGTCGCCAGCCAGATGGCCGATGCCCGCCTGACCATGGTCAGCGCCCAGATCGAGGTGGAGAACGCCCGTTTCCGCGC CAGTGGCAAGCGCATCGATTTCGCTGGTTTCTTCCGCGCCTATGTGGAGGGCAGCGATGACCCCGATGCGGCCCTGGAAG GTCAAGAGGTGCTGCTGCCCACGCTGCGCAGCGGCGATCACCCCAGCTGCCAAAGCTGCGAACCCCACGGCCACCAGACC CAGCCCCCCGCCCGTTTCAGCGAAGCGGCCCTGGTGAAAATGCTGGAGAAAGAGGGCATTGGTCGTCCCTCCACCTACGC CTCGATCATTGGCACCATCTGCGATCGCGGCTACGCCACCCTGCAGAACAACTCGTTGACCCCCAGCTTCACGGCTTTTG CCGTGACGGCTCTGCTGGAGGAGCACTTCCCGGATTTGGTTGATCCCAGCTTCACGGCGCGGATGGAGAACACCCTCGAT GAGATTTCCAACGGCTCAGCGGAGTGGCTTCCCTACCTCGATCACTTCTTCCGCGGTGACAAGGGCCTGGAGCAACAGGT GGCCAAGCGCGAGGGGGATATCGATCCGGTGGCTTCCCGCACGATCGAACTCGATGGCTTGCCCTGTGTGGTGCGAATCG GCCGTTTTGGTGCCTATCTCGAGGCCAAGCGCCCTGGCGAAGACGGCGAAGAGGAGCTGATCAAGGCCACCCTGCCCCAG GACCTGACGCCCGCTGATCTCGACAGTGATCAGGCGGAATTGCTGCTCAAGCAGAAGGCTGATGGCCCCGAAAGCTTGGG TGAAGATCCCGCCACCGGTGAGGGGATATATCTGCTGTTTGGCCAGTACGGCCCCTACGTGCAGCGCGGCCAGGCCAGCG AGGAGACCCCCAAGCCCAAGCGGGCCTCGTTGCCGCGGGGCACCAAGCCCGAAGACGTGACCTTGGAGATGGCCAGTGGC TTGCTGCAGCTGCCCCGGCTGCTCGGTGAGCACCCTGAAGGCGGCAAGGTGCAAGCAGGCCTGGGTCGTTTCGGTTCCTA TGTCGTTCACGACAAGGGCAAGGGCGAGAAGGATTACCGCTCCCTCAAGGCCGATGACGATGTGCTCGAGGTGGGCTTTG AGCGCGCCATGGAGCTGCTGTCGATGCCCAAGCGGGGCCGCGGCGGCCGCACCGCCCTGAAGTCGCTGGGCACGCCCGAT GGCAGCGATGAAGCAATCCAGCTGTTTGATGGCCCCTATGGCCTGTATGTGAAGCAGGGCAAGGTGAACGCCTCGTTGCC GGAGGGCACCACCGCCGAGACGATCACCCTCGAGCAGGCCATCGAATTGTTGGAGGCCAAGGCCGCCACCAAAAAATCAA GCCGCAAGAGCACAGCCAAGAAAAAGCCCGCGGCCAAGAAACCAGCGGCCAAAAAACCTGCAGCACCGCGCACCACCAAG ACGGGCCGGCTGCGGGCTAGCGCTGTGCGGGTGATCAAGGCTGCCGACAGTTGA
Upstream 100 bases:
>100_bases CAGCACTGTTTCGTACTAAGCCGGATGGTAGCCCTCTCCCCTTGAGGGCTCGGATCTACCCTTCGGATTCGGACTCCCCT GCGTTCGGCTGCTGCCGCCT
Downstream 100 bases:
>100_bases TGGCTCGGCCCCTGCTTGTTGGGCTGCTGCCACTGCTGCTGGTGGGATGCAGCAGCACGCCCCTGGGCCAGCAGTTGGGG GCCAGCTTTGATGCGCCGCC
Product: DNA topoisomerase I
Products: NA
Alternate protein names: DNA topoisomerase I; Omega-protein; Relaxing enzyme; Swivelase; Untwisting enzyme [H]
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MPNTLVIVESPTKARTIRGFLPRTFRVEASMGHVRDLPNNASEIPASHKAEKWAKTGVNTEKDFEPLYVVPKDKKKIVKE LKDALKVADELLLATDEDREGESISWHLLQLLNPKVPVKRMVFHEITEEAIKRALGQTRELNMELVHAQETRRILDRLVG YTVSPLLWKKVAWGLSAGRVQSVAVRLLVQRERARRAFRSGSYWDLKAQLKHEGISFEAKLSHLAGERIATGGDFDESTG AIKAGTKVKLLSEADAQGLLKAIDGKTWSVAEVEEKPTTRRPAPPFTTSTLQQEANRKLRLSAREAMRTAQGLYERGYIT YMRTDSVHLSEQAITAARSCVSDKYGADHLSPQPRQYTTKSRNAQEAHEAIRPAGSSFRTPAESGLKGLDLSLYELIWKR TVASQMADARLTMVSAQIEVENARFRASGKRIDFAGFFRAYVEGSDDPDAALEGQEVLLPTLRSGDHPSCQSCEPHGHQT QPPARFSEAALVKMLEKEGIGRPSTYASIIGTICDRGYATLQNNSLTPSFTAFAVTALLEEHFPDLVDPSFTARMENTLD EISNGSAEWLPYLDHFFRGDKGLEQQVAKREGDIDPVASRTIELDGLPCVVRIGRFGAYLEAKRPGEDGEEELIKATLPQ DLTPADLDSDQAELLLKQKADGPESLGEDPATGEGIYLLFGQYGPYVQRGQASEETPKPKRASLPRGTKPEDVTLEMASG LLQLPRLLGEHPEGGKVQAGLGRFGSYVVHDKGKGEKDYRSLKADDDVLEVGFERAMELLSMPKRGRGGRTALKSLGTPD GSDEAIQLFDGPYGLYVKQGKVNASLPEGTTAETITLEQAIELLEAKAATKKSSRKSTAKKKPAAKKPAAKKPAAPRTTK TGRLRASAVRVIKAADS
Sequences:
>Translated_897_residues MPNTLVIVESPTKARTIRGFLPRTFRVEASMGHVRDLPNNASEIPASHKAEKWAKTGVNTEKDFEPLYVVPKDKKKIVKE LKDALKVADELLLATDEDREGESISWHLLQLLNPKVPVKRMVFHEITEEAIKRALGQTRELNMELVHAQETRRILDRLVG YTVSPLLWKKVAWGLSAGRVQSVAVRLLVQRERARRAFRSGSYWDLKAQLKHEGISFEAKLSHLAGERIATGGDFDESTG AIKAGTKVKLLSEADAQGLLKAIDGKTWSVAEVEEKPTTRRPAPPFTTSTLQQEANRKLRLSAREAMRTAQGLYERGYIT YMRTDSVHLSEQAITAARSCVSDKYGADHLSPQPRQYTTKSRNAQEAHEAIRPAGSSFRTPAESGLKGLDLSLYELIWKR TVASQMADARLTMVSAQIEVENARFRASGKRIDFAGFFRAYVEGSDDPDAALEGQEVLLPTLRSGDHPSCQSCEPHGHQT QPPARFSEAALVKMLEKEGIGRPSTYASIIGTICDRGYATLQNNSLTPSFTAFAVTALLEEHFPDLVDPSFTARMENTLD EISNGSAEWLPYLDHFFRGDKGLEQQVAKREGDIDPVASRTIELDGLPCVVRIGRFGAYLEAKRPGEDGEEELIKATLPQ DLTPADLDSDQAELLLKQKADGPESLGEDPATGEGIYLLFGQYGPYVQRGQASEETPKPKRASLPRGTKPEDVTLEMASG LLQLPRLLGEHPEGGKVQAGLGRFGSYVVHDKGKGEKDYRSLKADDDVLEVGFERAMELLSMPKRGRGGRTALKSLGTPD GSDEAIQLFDGPYGLYVKQGKVNASLPEGTTAETITLEQAIELLEAKAATKKSSRKSTAKKKPAAKKPAAKKPAAPRTTK TGRLRASAVRVIKAADS >Mature_896_residues PNTLVIVESPTKARTIRGFLPRTFRVEASMGHVRDLPNNASEIPASHKAEKWAKTGVNTEKDFEPLYVVPKDKKKIVKEL KDALKVADELLLATDEDREGESISWHLLQLLNPKVPVKRMVFHEITEEAIKRALGQTRELNMELVHAQETRRILDRLVGY TVSPLLWKKVAWGLSAGRVQSVAVRLLVQRERARRAFRSGSYWDLKAQLKHEGISFEAKLSHLAGERIATGGDFDESTGA IKAGTKVKLLSEADAQGLLKAIDGKTWSVAEVEEKPTTRRPAPPFTTSTLQQEANRKLRLSAREAMRTAQGLYERGYITY MRTDSVHLSEQAITAARSCVSDKYGADHLSPQPRQYTTKSRNAQEAHEAIRPAGSSFRTPAESGLKGLDLSLYELIWKRT VASQMADARLTMVSAQIEVENARFRASGKRIDFAGFFRAYVEGSDDPDAALEGQEVLLPTLRSGDHPSCQSCEPHGHQTQ PPARFSEAALVKMLEKEGIGRPSTYASIIGTICDRGYATLQNNSLTPSFTAFAVTALLEEHFPDLVDPSFTARMENTLDE ISNGSAEWLPYLDHFFRGDKGLEQQVAKREGDIDPVASRTIELDGLPCVVRIGRFGAYLEAKRPGEDGEEELIKATLPQD LTPADLDSDQAELLLKQKADGPESLGEDPATGEGIYLLFGQYGPYVQRGQASEETPKPKRASLPRGTKPEDVTLEMASGL LQLPRLLGEHPEGGKVQAGLGRFGSYVVHDKGKGEKDYRSLKADDDVLEVGFERAMELLSMPKRGRGGRTALKSLGTPDG SDEAIQLFDGPYGLYVKQGKVNASLPEGTTAETITLEQAIELLEAKAATKKSSRKSTAKKKPAAKKPAAKKPAAPRTTKT GRLRASAVRVIKAADS
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI10835218, Length=520, Percent_Identity=25.1923076923077, Blast_Score=124, Evalue=4e-28, Organism=Homo sapiens, GI4507635, Length=657, Percent_Identity=23.7442922374429, Blast_Score=112, Evalue=2e-24, Organism=Escherichia coli, GI1787529, Length=610, Percent_Identity=40.9836065573771, Blast_Score=431, Evalue=1e-121, Organism=Escherichia coli, GI1788061, Length=617, Percent_Identity=24.9594813614263, Blast_Score=108, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17555378, Length=534, Percent_Identity=26.0299625468165, Blast_Score=122, Evalue=1e-27, Organism=Caenorhabditis elegans, GI32563869, Length=581, Percent_Identity=24.0963855421687, Blast_Score=105, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6323263, Length=526, Percent_Identity=24.7148288973384, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24585251, Length=519, Percent_Identity=25.626204238921, Blast_Score=121, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR005733 - InterPro: IPR006171 [H]
Pfam domain/function: PF01131 Topoisom_bac; PF01751 Toprim [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 98534; Mature: 98403
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTLVIVESPTKARTIRGFLPRTFRVEASMGHVRDLPNNASEIPASHKAEKWAKTGVNT CCCCEEEEECCCHHHHHHHCCCCEEEEECCCCHHHCCCCCHHHCCCHHHHHHHHHCCCCC EKDFEPLYVVPKDKKKIVKELKDALKVADELLLATDEDREGESISWHLLQLLNPKVPVKR CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH MVFHEITEEAIKRALGQTRELNMELVHAQETRRILDRLVGYTVSPLLWKKVAWGLSAGRV HHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH QSVAVRLLVQRERARRAFRSGSYWDLKAQLKHEGISFEAKLSHLAGERIATGGDFDESTG HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCCC AIKAGTKVKLLSEADAQGLLKAIDGKTWSVAEVEEKPTTRRPAPPFTTSTLQQEANRKLR CEECCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEE LSAREAMRTAQGLYERGYITYMRTDSVHLSEQAITAARSCVSDKYGADHLSPQPRQYTTK HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCC SRNAQEAHEAIRPAGSSFRTPAESGLKGLDLSLYELIWKRTVASQMADARLTMVSAQIEV CCCHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE ENARFRASGKRIDFAGFFRAYVEGSDDPDAALEGQEVLLPTLRSGDHPSCQSCEPHGHQT ECCEEECCCCEECHHHHHHHHHCCCCCCCCCCCCCHHEEHHHCCCCCCCCCCCCCCCCCC QPPARFSEAALVKMLEKEGIGRPSTYASIIGTICDRGYATLQNNSLTPSFTAFAVTALLE CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH EHFPDLVDPSFTARMENTLDEISNGSAEWLPYLDHFFRGDKGLEQQVAKREGDIDPVASR HHCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHC TIELDGLPCVVRIGRFGAYLEAKRPGEDGEEELIKATLPQDLTPADLDSDQAELLLKQKA EEEECCCCCEEEHHHHCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC DGPESLGEDPATGEGIYLLFGQYGPYVQRGQASEETPKPKRASLPRGTKPEDVTLEMASG CCCHHCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LLQLPRLLGEHPEGGKVQAGLGRFGSYVVHDKGKGEKDYRSLKADDDVLEVGFERAMELL HHHHHHHHCCCCCCCCEECCHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHH SMPKRGRGGRTALKSLGTPDGSDEAIQLFDGPYGLYVKQGKVNASLPEGTTAETITLEQA CCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHEEHHHH IELLEAKAATKKSSRKSTAKKKPAAKKPAAKKPAAPRTTKTGRLRASAVRVIKAADS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure PNTLVIVESPTKARTIRGFLPRTFRVEASMGHVRDLPNNASEIPASHKAEKWAKTGVNT CCCEEEEECCCHHHHHHHCCCCEEEEECCCCHHHCCCCCHHHCCCHHHHHHHHHCCCCC EKDFEPLYVVPKDKKKIVKELKDALKVADELLLATDEDREGESISWHLLQLLNPKVPVKR CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH MVFHEITEEAIKRALGQTRELNMELVHAQETRRILDRLVGYTVSPLLWKKVAWGLSAGRV HHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH QSVAVRLLVQRERARRAFRSGSYWDLKAQLKHEGISFEAKLSHLAGERIATGGDFDESTG HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCCC AIKAGTKVKLLSEADAQGLLKAIDGKTWSVAEVEEKPTTRRPAPPFTTSTLQQEANRKLR CEECCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEE LSAREAMRTAQGLYERGYITYMRTDSVHLSEQAITAARSCVSDKYGADHLSPQPRQYTTK HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCC SRNAQEAHEAIRPAGSSFRTPAESGLKGLDLSLYELIWKRTVASQMADARLTMVSAQIEV CCCHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE ENARFRASGKRIDFAGFFRAYVEGSDDPDAALEGQEVLLPTLRSGDHPSCQSCEPHGHQT ECCEEECCCCEECHHHHHHHHHCCCCCCCCCCCCCHHEEHHHCCCCCCCCCCCCCCCCCC QPPARFSEAALVKMLEKEGIGRPSTYASIIGTICDRGYATLQNNSLTPSFTAFAVTALLE CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH EHFPDLVDPSFTARMENTLDEISNGSAEWLPYLDHFFRGDKGLEQQVAKREGDIDPVASR HHCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHC TIELDGLPCVVRIGRFGAYLEAKRPGEDGEEELIKATLPQDLTPADLDSDQAELLLKQKA EEEECCCCCEEEHHHHCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC DGPESLGEDPATGEGIYLLFGQYGPYVQRGQASEETPKPKRASLPRGTKPEDVTLEMASG CCCHHCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LLQLPRLLGEHPEGGKVQAGLGRFGSYVVHDKGKGEKDYRSLKADDDVLEVGFERAMELL HHHHHHHHCCCCCCCCEECCHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHH SMPKRGRGGRTALKSLGTPDGSDEAIQLFDGPYGLYVKQGKVNASLPEGTTAETITLEQA CCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHEEHHHH IELLEAKAATKKSSRKSTAKKKPAAKKPAAKKPAAPRTTKTGRLRASAVRVIKAADS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7659748 [H]