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The map label for this gene is rhaS [C]

Identifier: 148241729

GI number: 148241729

Start: 569421

End: 570371

Strand: Direct

Name: rhaS [C]

Synonym: SynRCC307_0630

Alternate gene names: 148241729

Gene position: 569421-570371 (Clockwise)

Preceding gene: 148241725

Following gene: 148241730

Centisome position: 25.59

GC content: 57.62

Gene sequence:

>951_bases
GTGTCGGTTCGACGCCTAAGCGGACTGGTTGATCATCGTTTTAGCAGCGCTTCTGAGCTGGAAGCGCTGCTGGCTTCGAT
TGGTTTTGAAGCACAAGTGCTGCAGCTAGAAGGCGGCGTTCTTCAGGGGCGTTTTCAGTTTCTTGCTGATCAACGGGTCG
CGTTGTTGCGTCTGCAAAGCAGTCTTGGTATTTCAATCGGCTGTGCCCGCAAGGCCGAGATGATTTGTTGCGGCTTTGAG
CTTGAGGGCAAGCCTGATGTGGTCTTGGCCCATGGTCAGCCCATTGCTCCCCATGCTGTGGCTGGTGTGTCTCTCGCTTT
GAGCTACAGCTTTTTCCAGTTCCGCTCAGGAGCTGATGTGGTGATTGCGCTGCTGCCGAAGCAGGACTTGATTGAGCAGC
TCGAAATCTGCGGCGGTCAGCAATGCCTGCGTTGGATGCAATCGCACAATCAGTTGTTGCTTCATCAGCAGGCGCATCAG
GCGCTCGTTGGACTGCTGCGGCACTGGTTGGCTGATCCTGGCGCGATTCCATCTGATCCCACCGCAGCCGTTGTCCGGCT
ACTGAATGACGACACAGTCCATGGCGCGGTTCCATTCCGGTGGGTGACGCGATTCCAGCTGGTGTTTGACCTGATTGCGC
TGGGTGCCCGCGGCACCATTGACGGGCTGGATTTGGATCAACTGGCCGATCGCTTGAGCTGCTCACGGCGCAGCCTGATC
CAGGGATGCAAAGAGCTGTTGGGAATGGGGCCCAAAGAGGTATTGCGGATTCAGCGGCTTGAGCAGGTCCATCAGGCTTT
GCTGCGCCATGACCCCAAGTCGGCTGTTGCGCCGCAAACGGTGAATGCTGTTGCGGAGCGCTTCGGCTTTCAAAGCCGCG
GTCATTTTGCGGCGGCCTACAGGCGTCAGTTTGGGGAACTGCCAGCTGCCAGCTTCAGAAAGAGGGCCTAA

Upstream 100 bases:

>100_bases
TACTTGTATTGCTTAAGCCGCGTGTTGCGACTGTGCGCGGCGCGGCAATGCGTCTCAATCTCATTACCATCAGTCGTGCT
CAGTACTGAGAACCCTCTCT

Downstream 100 bases:

>100_bases
GTGCCACAACTGCGTAGGCAGCCTTGATAAAACCGCCTACCTTGGCCGCACTTTCTAGGGTCAGACGCGCGTTATGGCTG
CATCCATCAGCGCGTCAACC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: AraC-Type Regulatory Protein; AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSVRRLSGLVDHRFSSASELEALLASIGFEAQVLQLEGGVLQGRFQFLADQRVALLRLQSSLGISIGCARKAEMICCGFE
LEGKPDVVLAHGQPIAPHAVAGVSLALSYSFFQFRSGADVVIALLPKQDLIEQLEICGGQQCLRWMQSHNQLLLHQQAHQ
ALVGLLRHWLADPGAIPSDPTAAVVRLLNDDTVHGAVPFRWVTRFQLVFDLIALGARGTIDGLDLDQLADRLSCSRRSLI
QGCKELLGMGPKEVLRIQRLEQVHQALLRHDPKSAVAPQTVNAVAERFGFQSRGHFAAAYRRQFGELPAASFRKRA

Sequences:

>Translated_316_residues
MSVRRLSGLVDHRFSSASELEALLASIGFEAQVLQLEGGVLQGRFQFLADQRVALLRLQSSLGISIGCARKAEMICCGFE
LEGKPDVVLAHGQPIAPHAVAGVSLALSYSFFQFRSGADVVIALLPKQDLIEQLEICGGQQCLRWMQSHNQLLLHQQAHQ
ALVGLLRHWLADPGAIPSDPTAAVVRLLNDDTVHGAVPFRWVTRFQLVFDLIALGARGTIDGLDLDQLADRLSCSRRSLI
QGCKELLGMGPKEVLRIQRLEQVHQALLRHDPKSAVAPQTVNAVAERFGFQSRGHFAAAYRRQFGELPAASFRKRA
>Mature_315_residues
SVRRLSGLVDHRFSSASELEALLASIGFEAQVLQLEGGVLQGRFQFLADQRVALLRLQSSLGISIGCARKAEMICCGFEL
EGKPDVVLAHGQPIAPHAVAGVSLALSYSFFQFRSGADVVIALLPKQDLIEQLEICGGQQCLRWMQSHNQLLLHQQAHQA
LVGLLRHWLADPGAIPSDPTAAVVRLLNDDTVHGAVPFRWVTRFQLVFDLIALGARGTIDGLDLDQLADRLSCSRRSLIQ
GCKELLGMGPKEVLRIQRLEQVHQALLRHDPKSAVAPQTVNAVAERFGFQSRGHFAAAYRRQFGELPAASFRKRA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34678; Mature: 34546

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00028 ZINC_FINGER_C2H2_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRRLSGLVDHRFSSASELEALLASIGFEAQVLQLEGGVLQGRFQFLADQRVALLRLQS
CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
SLGISIGCARKAEMICCGFELEGKPDVVLAHGQPIAPHAVAGVSLALSYSFFQFRSGADV
HCCCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
VIALLPKQDLIEQLEICGGQQCLRWMQSHNQLLLHQQAHQALVGLLRHWLADPGAIPSDP
EEEECCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
TAAVVRLLNDDTVHGAVPFRWVTRFQLVFDLIALGARGTIDGLDLDQLADRLSCSRRSLI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
QGCKELLGMGPKEVLRIQRLEQVHQALLRHDPKSAVAPQTVNAVAERFGFQSRGHFAAAY
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
RRQFGELPAASFRKRA
HHHHCCCCHHHHHCCC
>Mature Secondary Structure 
SVRRLSGLVDHRFSSASELEALLASIGFEAQVLQLEGGVLQGRFQFLADQRVALLRLQS
CHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
SLGISIGCARKAEMICCGFELEGKPDVVLAHGQPIAPHAVAGVSLALSYSFFQFRSGADV
HCCCEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
VIALLPKQDLIEQLEICGGQQCLRWMQSHNQLLLHQQAHQALVGLLRHWLADPGAIPSDP
EEEECCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
TAAVVRLLNDDTVHGAVPFRWVTRFQLVFDLIALGARGTIDGLDLDQLADRLSCSRRSLI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
QGCKELLGMGPKEVLRIQRLEQVHQALLRHDPKSAVAPQTVNAVAERFGFQSRGHFAAAY
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
RRQFGELPAASFRKRA
HHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA