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The map label for this gene is yggS [C]

Identifier: 148241568

GI number: 148241568

Start: 438237

End: 438875

Strand: Direct

Name: yggS [C]

Synonym: SynRCC307_0469

Alternate gene names: 148241568

Gene position: 438237-438875 (Clockwise)

Preceding gene: 148241567

Following gene: 148241569

Centisome position: 19.7

GC content: 62.75

Gene sequence:

>639_bases
GTGGGCAGCCTGGCGCAGCGGTATGAAGCGATCCTGCAGGAGTTGCCCCCCGGGGTGAAGCTGCTGGCGGTGAGCAAGGG
GCGCTCCGCCGCTGAGATTCGCGCTCTCTATGGGTTAGGGCAGCGCAGCTTCGGGGAAAGCCGGGTGCAGGAAGCGGCGT
TGAAGCAGCAAGAGCTCGCTGATCTCGCCGATATCGACTGGCAGTTCATCGGCCGCCTGCAGGCCAACAAAGTGCGCCCT
GTGCTCAAGGCCTTCACCACGATTCATGCCGTCGACAGCTTCAACTTGGCTGCGCGCGTCAGCCGCATCGCTGGAGAGCT
TGGGCTTTGTCCACAGCTCTATCTGCAGTTGAAGTTGCGGCCGGATGCCAACAAAGCGGGATTGAGTTGGGCTGAGGCCC
AATCCCTATGGCCGCAGTTGCAAAACCTGCCCCATGTGCATTGGCAGGGGGTGATGGTGATCCCGCCGCGCGAGCTGGCT
GAGCAGGACTTAGGCGCCTTGTTTGCCGAAGCGGTGGGCCATGCAGATGCTCTCGGTTTGGCCGGTCGCTCGATGGGAAT
GAGCGGGGACTGGCCATTGGCAGCGCAGCAGGGCAGCACGGTTGTGCGAGTGGGCAGTGCGCTGTTTGGTTCGGATTAA

Upstream 100 bases:

>100_bases
GCGTCATCACGCTGAGCAAAACCTGCTGCGCTTGAGGCGCAATCAGTCGCCGGAGTTGCCGCTCTGGAAAAAGCTGTTTG
ATCAGACTTTCATTTGAGTC

Downstream 100 bases:

>100_bases
GCGGTGACCAGTTGCAACTGACTGGCGCAGACGCTATTCAAGGACATCACCACAAAGGGGCTCACGGCGGTGTCCATTTT
TTCTCGTCTCAAGAAGGTTG

Product: TIM-barrel fold family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MGSLAQRYEAILQELPPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEAALKQQELADLADIDWQFIGRLQANKVRP
VLKAFTTIHAVDSFNLAARVSRIAGELGLCPQLYLQLKLRPDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELA
EQDLGALFAEAVGHADALGLAGRSMGMSGDWPLAAQQGSTVVRVGSALFGSD

Sequences:

>Translated_212_residues
MGSLAQRYEAILQELPPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEAALKQQELADLADIDWQFIGRLQANKVRP
VLKAFTTIHAVDSFNLAARVSRIAGELGLCPQLYLQLKLRPDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELA
EQDLGALFAEAVGHADALGLAGRSMGMSGDWPLAAQQGSTVVRVGSALFGSD
>Mature_211_residues
GSLAQRYEAILQELPPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEAALKQQELADLADIDWQFIGRLQANKVRPV
LKAFTTIHAVDSFNLAARVSRIAGELGLCPQLYLQLKLRPDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELAE
QDLGALFAEAVGHADALGLAGRSMGMSGDWPLAAQQGSTVVRVGSALFGSD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=212, Percent_Identity=32.5471698113208, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI1789321, Length=210, Percent_Identity=34.7619047619048, Blast_Score=98, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17533025, Length=215, Percent_Identity=34.4186046511628, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=31.4814814814815, Blast_Score=79, Evalue=6e-16,
Organism=Drosophila melanogaster, GI45550861, Length=231, Percent_Identity=32.4675324675325, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 22859; Mature: 22727

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLAQRYEAILQELPPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEAALKQQELA
CCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
DLADIDWQFIGRLQANKVRPVLKAFTTIHAVDSFNLAARVSRIAGELGLCPQLYLQLKLR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHEEEEEEC
PDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELAEQDLGALFAEAVGHADALGL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHH
AGRSMGMSGDWPLAAQQGSTVVRVGSALFGSD
CCCCCCCCCCCCCCCCCCCEEEEECCHHHCCC
>Mature Secondary Structure 
GSLAQRYEAILQELPPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEAALKQQELA
CHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
DLADIDWQFIGRLQANKVRPVLKAFTTIHAVDSFNLAARVSRIAGELGLCPQLYLQLKLR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHEEEEEEC
PDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELAEQDLGALFAEAVGHADALGL
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHH
AGRSMGMSGDWPLAAQQGSTVVRVGSALFGSD
CCCCCCCCCCCCCCCCCCCEEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]