| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241406
Identifier: 148241406
GI number: 148241406
Start: 302693
End: 304072
Strand: Direct
Name: 148241406
Synonym: SynRCC307_0307
Alternate gene names: NA
Gene position: 302693-304072 (Clockwise)
Preceding gene: 148241405
Following gene: 148241407
Centisome position: 13.6
GC content: 62.75
Gene sequence:
>1380_bases GTGTGGAACGAGCCCAGTGATGGGGTTCCTCTGCAGGCTGATCCCAGTGCCGCAGCGCCGCAGCCCGCCGTGGTGGCCAC GGTGGAGCCGGGATCGATCGGCGAGGAGCTTGGCTTTCAACCTGGCGACCGTCTGGTGGCTGTCAATGGCATTCGCCCGC GGGATCTGATTGATCTGCGCATGCTCTGCGGTGAGGAAGATCTCGCCTTGGAGGTGGAGGACCCCGATGGCACCAGTCAT CACATTGAACTGGAAAAAGATGCTGATGACGGCTTGGGTTTGGGCTTTACCGAGGCCCTATTCGATGGCCTGAAGCAGTG CAACAACCACTGCCCGTTCTGCTTTATCGATCAGCAGCCTCCAGGGCGGCGCTCAAGCCTGTATCTCAAAGACGACGACT ACCGCCTCAGCTTTCTCTACGGCTCCTACCTCACCCTCACCAACCTGTTGCCAGCCGATTGGCAGCGGATCGAGCGCCAA CGCCTCTCGCCGCTTTTTGTCTCGGTCCATGCCACCAATCCCGCCCTGCGCAGCCGATTGCTGGTCAACGAGCGGGCCGG CCAGATCCTCGATCAAATCGCCTGGTTTCAAGCCAAGCGCCTGCAAATCCATGCCCAGGTGGTGGTGTGCCCAGGCCTGA ACGATGGCGATGCCCTGGTGCAAACCCTGCAGGACCTGGCGCGTTTTGGTGGTGGCGATTGGCCAGCGGTGCTGTCGGTG GCGGTGGTGCCGGTGGGGTTGACCCGTTTTCGCCCCGATGGGGATGGCCTGGTGCCGGTCACCCCGGCGATGGCTCAGCG CACCATTGCAGTGGTGGAACCCCTGCAGCAGCAGTTCTCGCAGCGTTTCGGCAGCCGTTGGGCCTGGCTCTCCGATGAGT GGTATTTGATGGCGGGGCTGCCGTTGCCGCAACGGGCCAGTTATGAGGATTTGCCCCAACAGGAGAACGGTGTTGGCAGC ATTCGCGCCTTCCTGGAGCAGCTCGATGACGCCACGCAAGAGCTGCCGGCTGCTTTGCCCAAATCCCGCAGCTTGAGTTG GGTGGTGGGGAGTTTGGTGGGGCCCAGCCTCAAGCCGGTGGTGGAGCGCTTGCATCAAGTGGAGGGGCTGGATCTCCGCC TGCAGTCCCTCCCTAGTCCCTATTGGGGCTGTGAGCAGGTGGTCACGGGGTTGCTCACCGGGCAAGACCTGATTGATGGG CTGCAAGGCAAGGACTTGGGCGATGCGGTGCTGCTGCCTGCGGTGCTGCTGCGCCAGGGCCAGCCTGTGTTTCTGGATGA CTTGAGCTTGGAGGACGTGCAGCAGTGCCTTGGAGTTCCGCTGCAGGTGGTGGGGGGTGCGGCTGAAGTCGTGGCTGCCT GCCTTCACGAAACCCCTTAG
Upstream 100 bases:
>100_bases CAGCACCTGGCCCTTTGTGATCTATCGATTGGTATTTGGGGTGGTTTTGCTGGCTCTCGTGCTGGCAAACCCCACACTGG GATAAGTCGCCTAAATCAGG
Downstream 100 bases:
>100_bases CCCCATTAAATTCTTTCCAAAGGAATTCGAAAGGGCTTGTGAAAGGACGTCTGCGCAGCAGCTTGCTGGCCCTCGTCCTG ATGGGCTCACCTCTTGCCGC
Product: Fe-S oxidoreductase
Products: NA
Alternate protein names: FeS-Containing Oxidoreductase; FeS-Containing Cyanobacterial-Specific Oxidoreductase; PDZ Domain Protein; FeS-Containing Organism-Specific Oxidoreductase; FeS-Containing-Specific Oxidoreductase; Response Regulator Receiver Protein; PDZ Domain-Containing Protein
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MWNEPSDGVPLQADPSAAAPQPAVVATVEPGSIGEELGFQPGDRLVAVNGIRPRDLIDLRMLCGEEDLALEVEDPDGTSH HIELEKDADDGLGLGFTEALFDGLKQCNNHCPFCFIDQQPPGRRSSLYLKDDDYRLSFLYGSYLTLTNLLPADWQRIERQ RLSPLFVSVHATNPALRSRLLVNERAGQILDQIAWFQAKRLQIHAQVVVCPGLNDGDALVQTLQDLARFGGGDWPAVLSV AVVPVGLTRFRPDGDGLVPVTPAMAQRTIAVVEPLQQQFSQRFGSRWAWLSDEWYLMAGLPLPQRASYEDLPQQENGVGS IRAFLEQLDDATQELPAALPKSRSLSWVVGSLVGPSLKPVVERLHQVEGLDLRLQSLPSPYWGCEQVVTGLLTGQDLIDG LQGKDLGDAVLLPAVLLRQGQPVFLDDLSLEDVQQCLGVPLQVVGGAAEVVAACLHETP
Sequences:
>Translated_459_residues MWNEPSDGVPLQADPSAAAPQPAVVATVEPGSIGEELGFQPGDRLVAVNGIRPRDLIDLRMLCGEEDLALEVEDPDGTSH HIELEKDADDGLGLGFTEALFDGLKQCNNHCPFCFIDQQPPGRRSSLYLKDDDYRLSFLYGSYLTLTNLLPADWQRIERQ RLSPLFVSVHATNPALRSRLLVNERAGQILDQIAWFQAKRLQIHAQVVVCPGLNDGDALVQTLQDLARFGGGDWPAVLSV AVVPVGLTRFRPDGDGLVPVTPAMAQRTIAVVEPLQQQFSQRFGSRWAWLSDEWYLMAGLPLPQRASYEDLPQQENGVGS IRAFLEQLDDATQELPAALPKSRSLSWVVGSLVGPSLKPVVERLHQVEGLDLRLQSLPSPYWGCEQVVTGLLTGQDLIDG LQGKDLGDAVLLPAVLLRQGQPVFLDDLSLEDVQQCLGVPLQVVGGAAEVVAACLHETP >Mature_459_residues MWNEPSDGVPLQADPSAAAPQPAVVATVEPGSIGEELGFQPGDRLVAVNGIRPRDLIDLRMLCGEEDLALEVEDPDGTSH HIELEKDADDGLGLGFTEALFDGLKQCNNHCPFCFIDQQPPGRRSSLYLKDDDYRLSFLYGSYLTLTNLLPADWQRIERQ RLSPLFVSVHATNPALRSRLLVNERAGQILDQIAWFQAKRLQIHAQVVVCPGLNDGDALVQTLQDLARFGGGDWPAVLSV AVVPVGLTRFRPDGDGLVPVTPAMAQRTIAVVEPLQQQFSQRFGSRWAWLSDEWYLMAGLPLPQRASYEDLPQQENGVGS IRAFLEQLDDATQELPAALPKSRSLSWVVGSLVGPSLKPVVERLHQVEGLDLRLQSLPSPYWGCEQVVTGLLTGQDLIDG LQGKDLGDAVLLPAVLLRQGQPVFLDDLSLEDVQQCLGVPLQVVGGAAEVVAACLHETP
Specific function: Unknown
COG id: COG1625
COG function: function code C; Fe-S oxidoreductase, related to NifB/MoaA family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50068; Mature: 50068
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWNEPSDGVPLQADPSAAAPQPAVVATVEPGSIGEELGFQPGDRLVAVNGIRPRDLIDLR CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCEEEECCCCCHHHHHHH MLCGEEDLALEVEDPDGTSHHIELEKDADDGLGLGFTEALFDGLKQCNNHCPFCFIDQQP HHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCC PGRRSSLYLKDDDYRLSFLYGSYLTLTNLLPADWQRIERQRLSPLFVSVHATNPALRSRL CCCCCEEEEECCCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHH LVNERAGQILDQIAWFQAKRLQIHAQVVVCPGLNDGDALVQTLQDLARFGGGDWPAVLSV HHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH AVVPVGLTRFRPDGDGLVPVTPAMAQRTIAVVEPLQQQFSQRFGSRWAWLSDEWYLMAGL HHHHHHHHEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECC PLPQRASYEDLPQQENGVGSIRAFLEQLDDATQELPAALPKSRSLSWVVGSLVGPSLKPV CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH VERLHQVEGLDLRLQSLPSPYWGCEQVVTGLLTGQDLIDGLQGKDLGDAVLLPAVLLRQG HHHHHHHCCCCEEHHHCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHCC QPVFLDDLSLEDVQQCLGVPLQVVGGAAEVVAACLHETP CCEEEECCCHHHHHHHHCCCHHHHCCHHHHHHHHHHCCC >Mature Secondary Structure MWNEPSDGVPLQADPSAAAPQPAVVATVEPGSIGEELGFQPGDRLVAVNGIRPRDLIDLR CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCEEEECCCCCHHHHHHH MLCGEEDLALEVEDPDGTSHHIELEKDADDGLGLGFTEALFDGLKQCNNHCPFCFIDQQP HHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCC PGRRSSLYLKDDDYRLSFLYGSYLTLTNLLPADWQRIERQRLSPLFVSVHATNPALRSRL CCCCCEEEEECCCEEEEEECCCHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHH LVNERAGQILDQIAWFQAKRLQIHAQVVVCPGLNDGDALVQTLQDLARFGGGDWPAVLSV HHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH AVVPVGLTRFRPDGDGLVPVTPAMAQRTIAVVEPLQQQFSQRFGSRWAWLSDEWYLMAGL HHHHHHHHEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECC PLPQRASYEDLPQQENGVGSIRAFLEQLDDATQELPAALPKSRSLSWVVGSLVGPSLKPV CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH VERLHQVEGLDLRLQSLPSPYWGCEQVVTGLLTGQDLIDGLQGKDLGDAVLLPAVLLRQG HHHHHHHCCCCEEHHHCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHCC QPVFLDDLSLEDVQQCLGVPLQVVGGAAEVVAACLHETP CCEEEECCCHHHHHHHHCCCHHHHCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA