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The map label for this gene is radA [H]

Identifier: 148241350

GI number: 148241350

Start: 248917

End: 250308

Strand: Direct

Name: radA [H]

Synonym: SynRCC307_0251

Alternate gene names: 148241350

Gene position: 248917-250308 (Clockwise)

Preceding gene: 148241344

Following gene: 148241352

Centisome position: 11.19

GC content: 65.16

Gene sequence:

>1392_bases
GTGCCCCGAACTGTCACCACCTACGTGTGCCAAAACTGCGGAGCCCAGAGCCGACAGTTTTTTGGCCGCTGTTCCTCCTG
CGGCAGCTGGAACAGCCTGGTGGAGCAAACCAGTGGTCCTCCGCCCGATGGCCGGCGCCGCCGCCAGAGCGCCGAAGCGG
CTGAACCAGCGCCGCGCCGCTCAGAGGCCATGGCTGCTGTGGGGGAGCGGGCTGTGCAGCGCCTTGGCACAGGGTTTGCT
GAGCTCGATCGGGTCTTGGGTGGCGGCTTGGTGCCGGGTTCGCTGGTGCTGGTCGGTGGTGACCCCGGCATTGGTAAAAG
CACTCTGCTGCTGCAAACCGCAGCAGATCTGGCCCAGCGCCAAAGCGTTCTCTACGTGAGTGCGGAGGAATCAGCCCAGC
AGGTGAAGTTGCGCTGGCAGCGGTTGGCCGCTGCTGGCAGTGATGGGGACGGTCCCCAGCTGCTGGCTGAAACCGATCTG
GAGCACGTGCTCCAGGAGCTCGAAGCCCTGCGGCCTGATGTGGCGGTGATCGACAGCATCCAGGCCCTGCATGACGCTGA
CTTGAGCAGTGCACCGGGTTCCGTGGCCCAGGTGCGTGAGTGCGCGGCATCGCTGCAGCGGCTGGCCAAAAAGCTCGATA
TCGCTCTGCTTTTGGTGGGCCACGTCACCAAAGAAGGGATGCTGGCGGGCCCCAAGGTGCTGGAGCACCTTGTGGATGCG
GTGCTCACCTTTGAAGGGGATCGTTTTGCCAGCCACCGGTTGCTGCGGGCGGTGAAAAATCGCTTCGGCGCCACCCATGA
GCTAGGGGTCTTTGAGATGCGCGATCGCGGCCTGCTGGAGGTGAGCAACCCCAGCGAGCTGTTTCTTGGAAGCCCGGAAG
GATCGGTGGGCATGGCCACGATCGTGGCCTGCGAGGGCACCAGGCCGTTGGTGGTGGAGCTGCAGGCGCTGGTGAGCACC
ACCAGCTACGCCAGCCCTAGGCGGATGGCCACCGGCATCGGCACCAATCGCTTGCATCAAATCCTTGCTGTGCTGGAGAA
GCACCTCGGCTTGCCCCTCTCCCGGTTCGACTGCTATTTGGCGGTGGCGGGTGGTTTGGAGGTGGAAGAACCGGCCGCAG
ATCTGGGTGTGGCCGCGGCGGTGGTGGCCAGCTTTCGCGATTTAGCCCTGCCCGCCGGCACGGTGCTGGTGGGTGAACTC
GGATTGGGCGGTCAGTTGCGGCCCGTTGGGCAGCTGGAGCTGCGCCTGCAAGAAGCCGCCCGCCTCGGCTTTCGCCGCGC
TGTGGTGCCAAAAGGCAGCGGGGTGAGCTGCCCTGAGTTGGCGATTGAAGAGGCCAGCGGCATTGCCGAAGCTTTGGTGG
CAGCGCTGGGAGTCAACCCGGCTGATGACTAG

Upstream 100 bases:

>100_bases
AACCGCCATGGTGTCGTGTGCGGACAATCAAGGTCCGGACCACTCAACCGAGACTCGGTCGAGTTCAAGTCCGAACAATC
ACCATTCTTCATAAACCCCG

Downstream 100 bases:

>100_bases
TTAGAGGTAGACGTCAGCTGAACCGCGGCCGGTGGTCTTCAGCCAGTTCTGGGCCTCGATGTAGTTGTTCGGTGCTAGGC
GGATCGCCTTGCTCCAGAAA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MPRTVTTYVCQNCGAQSRQFFGRCSSCGSWNSLVEQTSGPPPDGRRRRQSAEAAEPAPRRSEAMAAVGERAVQRLGTGFA
ELDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQTAADLAQRQSVLYVSAEESAQQVKLRWQRLAAAGSDGDGPQLLAETDL
EHVLQELEALRPDVAVIDSIQALHDADLSSAPGSVAQVRECAASLQRLAKKLDIALLLVGHVTKEGMLAGPKVLEHLVDA
VLTFEGDRFASHRLLRAVKNRFGATHELGVFEMRDRGLLEVSNPSELFLGSPEGSVGMATIVACEGTRPLVVELQALVST
TSYASPRRMATGIGTNRLHQILAVLEKHLGLPLSRFDCYLAVAGGLEVEEPAADLGVAAAVVASFRDLALPAGTVLVGEL
GLGGQLRPVGQLELRLQEAARLGFRRAVVPKGSGVSCPELAIEEASGIAEALVAALGVNPADD

Sequences:

>Translated_463_residues
MPRTVTTYVCQNCGAQSRQFFGRCSSCGSWNSLVEQTSGPPPDGRRRRQSAEAAEPAPRRSEAMAAVGERAVQRLGTGFA
ELDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQTAADLAQRQSVLYVSAEESAQQVKLRWQRLAAAGSDGDGPQLLAETDL
EHVLQELEALRPDVAVIDSIQALHDADLSSAPGSVAQVRECAASLQRLAKKLDIALLLVGHVTKEGMLAGPKVLEHLVDA
VLTFEGDRFASHRLLRAVKNRFGATHELGVFEMRDRGLLEVSNPSELFLGSPEGSVGMATIVACEGTRPLVVELQALVST
TSYASPRRMATGIGTNRLHQILAVLEKHLGLPLSRFDCYLAVAGGLEVEEPAADLGVAAAVVASFRDLALPAGTVLVGEL
GLGGQLRPVGQLELRLQEAARLGFRRAVVPKGSGVSCPELAIEEASGIAEALVAALGVNPADD
>Mature_462_residues
PRTVTTYVCQNCGAQSRQFFGRCSSCGSWNSLVEQTSGPPPDGRRRRQSAEAAEPAPRRSEAMAAVGERAVQRLGTGFAE
LDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQTAADLAQRQSVLYVSAEESAQQVKLRWQRLAAAGSDGDGPQLLAETDLE
HVLQELEALRPDVAVIDSIQALHDADLSSAPGSVAQVRECAASLQRLAKKLDIALLLVGHVTKEGMLAGPKVLEHLVDAV
LTFEGDRFASHRLLRAVKNRFGATHELGVFEMRDRGLLEVSNPSELFLGSPEGSVGMATIVACEGTRPLVVELQALVSTT
SYASPRRMATGIGTNRLHQILAVLEKHLGLPLSRFDCYLAVAGGLEVEEPAADLGVAAAVVASFRDLALPAGTVLVGELG
LGGQLRPVGQLELRLQEAARLGFRRAVVPKGSGVSCPELAIEEASGIAEALVAALGVNPADD

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=425, Percent_Identity=48.7058823529412, Blast_Score=390, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48653; Mature: 48522

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTVTTYVCQNCGAQSRQFFGRCSSCGSWNSLVEQTSGPPPDGRRRRQSAEAAEPAPRR
CCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCH
SEAMAAVGERAVQRLGTGFAELDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQTAADLAQR
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC
QSVLYVSAEESAQQVKLRWQRLAAAGSDGDGPQLLAETDLEHVLQELEALRPDVAVIDSI
CCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
QALHDADLSSAPGSVAQVRECAASLQRLAKKLDIALLLVGHVTKEGMLAGPKVLEHLVDA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VLTFEGDRFASHRLLRAVKNRFGATHELGVFEMRDRGLLEVSNPSELFLGSPEGSVGMAT
HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCCCEEEECCCCCCCEEE
IVACEGTRPLVVELQALVSTTSYASPRRMATGIGTNRLHQILAVLEKHLGLPLSRFDCYL
EEEECCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHEEE
AVAGGLEVEEPAADLGVAAAVVASFRDLALPAGTVLVGELGLGGQLRPVGQLELRLQEAA
EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
RLGFRRAVVPKGSGVSCPELAIEEASGIAEALVAALGVNPADD
HHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PRTVTTYVCQNCGAQSRQFFGRCSSCGSWNSLVEQTSGPPPDGRRRRQSAEAAEPAPRR
CCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCH
SEAMAAVGERAVQRLGTGFAELDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQTAADLAQR
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHC
QSVLYVSAEESAQQVKLRWQRLAAAGSDGDGPQLLAETDLEHVLQELEALRPDVAVIDSI
CCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
QALHDADLSSAPGSVAQVRECAASLQRLAKKLDIALLLVGHVTKEGMLAGPKVLEHLVDA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
VLTFEGDRFASHRLLRAVKNRFGATHELGVFEMRDRGLLEVSNPSELFLGSPEGSVGMAT
HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCCCEEEECCCCCCCEEE
IVACEGTRPLVVELQALVSTTSYASPRRMATGIGTNRLHQILAVLEKHLGLPLSRFDCYL
EEEECCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHEEE
AVAGGLEVEEPAADLGVAAAVVASFRDLALPAGTVLVGELGLGGQLRPVGQLELRLQEAA
EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
RLGFRRAVVPKGSGVSCPELAIEEASGIAEALVAALGVNPADD
HHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]