| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241264
Identifier: 148241264
GI number: 148241264
Start: 162533
End: 164053
Strand: Direct
Name: 148241264
Synonym: SynRCC307_0165
Alternate gene names: NA
Gene position: 162533-164053 (Clockwise)
Preceding gene: 148241262
Following gene: 148241265
Centisome position: 7.31
GC content: 60.03
Gene sequence:
>1521_bases ATGCAGACCATGGGCCATGGCAACGGTTGCCAGCCAGTCCATCCATTGCTCGGCAGCGCTGCTGGGGTGCACTACGGTTT GCCCGGCTTTCGCACGGCTGTGACTTCACCTGCCCAGGGTGACGACTGGTTCAGCAAGTTCAAGCGTTGGCGCCTGGCCA AGGCGGTGCGATTGATCAAAGAACTGGAGATCTACCGAAATTTTTTTCCTGCTGATCTGATCAGGCAGTGGCTAATCGGC ATTCAGCCGGGGATTGCGCCACTGCGGCAAAGGCTCAGTCAGCAGGTGGAGTTTGTGCTGTGGCTGCCTCCAGGTTGGCA ACTCTCCGTTGCGCAACGAAAGCGTTTGCATCGGGTTCTTGTCCGCCGGCAAGCCCGCACGGGCGCCCAGGTGGTGAGTT GTGATGACTGGCTTCTGCTTCCCACCGGCAAGCGGCTTTGGCGCCAGAAAGGCCGGCTTGATCCGTTATTGGATCGAGCC ACTGGTGAAGCAGAGGGTCCTTTGTGGATTCAACGCAACTTGCTGCAGCAACTGGGTGAGCCGCCCGAGCAGGTACAAGC GCGGCCTGCTTGGCGTGCTCACCTTTTTGAGACCGTTGGAGCTGAGGCCTGGGCCCATGTGGCCTTGCCGCTAGCGATCT CTCCACCGGTTGAGTTGCCACCAGCCCAGCCTGCTCAGCCCAAAGGAAACCCTTTGGTGAGTGTGTTGATTCCATCCGGT GGGTTTCACAAGCCCATTGGTGGCCGCAACACGATGTTGCTGCGCCATTGCCTCACTTGCCTGTTGCAGCGCAGTGACTA CCGCGAACTCGAGATTGTTCTGATTGATGGTGGTGAGCTCAGCGCAGCCGAGCTTGAGGAGTTTGAGAATTTGATTGGCT ATGGGCTAGGCCCAGGTCGCTGGCGCCACGGACGTAGCGACTTGTCCTACAGCTACAGCCAGCGCATCAACCAGGCGGCG GCTGCAGCTCGCGGAGAGTTTTTATTGCAACTCAACGACGACACCGAGTTGCTGGAGCCAGGGGCCATCGGCTCCATGCT GGCCCATGCCCAGGAACCCCAGATCGGCGTTGTCGGTGCGTTGTTGCTTTACCCGGGTGGCCGCGTTCAGCACGCCGGCG TTGCGGTCGACAATCTCGCCCCGCGTCACGCCTGGGTTGGTTGTTGGCCTAACCGTTTACCCCCTGGCTTGCTTGCTGCT GCGCGTCAATTTCAGGCTGTCACGGCTGCAGTGAGTCTGTGCAGCGCTGAGCTATGGCAACAGCTGGGTGGTCTTCGCAA TGACCTGCCCATCAACTACGGCGATGTGGATTTCTGCTTGCGGGCGCGGCAGCGCGGCCATGCGGTGGTGCTGGATCCAG CAAGCCGCTGGACACACTTCGAATCAGCTAGCCGGAGCACCGCCGGAATTCCGCCTGAATTACCACGCTTCCGCGAGTTG TGGAGTACGGAACTCGGAGGCCGCTGGAGCATTGATCCATATGTCTCACGCTGGCGCGAGCTGATGCTGCAGAAGGGTTA A
Upstream 100 bases:
>100_bases CTGGCCAGCTGCACACTCCTTCAACAACCAGATCCAAATCCTTGTCGGGGGTGCTTTTGCCAAGGAGCCGGTCGCGAACA GCACCACCCACCACGCTGAG
Downstream 100 bases:
>100_bases TGGCTAAGCACTTTTGGATTTACACGCACAACTTCACCCATAGCGGCGCCCCTCTGGTGATGGCGTCGGTTGCACGCGAA CTGGCAGCAGCTGGTTGGCG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MQTMGHGNGCQPVHPLLGSAAGVHYGLPGFRTAVTSPAQGDDWFSKFKRWRLAKAVRLIKELEIYRNFFPADLIRQWLIG IQPGIAPLRQRLSQQVEFVLWLPPGWQLSVAQRKRLHRVLVRRQARTGAQVVSCDDWLLLPTGKRLWRQKGRLDPLLDRA TGEAEGPLWIQRNLLQQLGEPPEQVQARPAWRAHLFETVGAEAWAHVALPLAISPPVELPPAQPAQPKGNPLVSVLIPSG GFHKPIGGRNTMLLRHCLTCLLQRSDYRELEIVLIDGGELSAAELEEFENLIGYGLGPGRWRHGRSDLSYSYSQRINQAA AAARGEFLLQLNDDTELLEPGAIGSMLAHAQEPQIGVVGALLLYPGGRVQHAGVAVDNLAPRHAWVGCWPNRLPPGLLAA ARQFQAVTAAVSLCSAELWQQLGGLRNDLPINYGDVDFCLRARQRGHAVVLDPASRWTHFESASRSTAGIPPELPRFREL WSTELGGRWSIDPYVSRWRELMLQKG
Sequences:
>Translated_506_residues MQTMGHGNGCQPVHPLLGSAAGVHYGLPGFRTAVTSPAQGDDWFSKFKRWRLAKAVRLIKELEIYRNFFPADLIRQWLIG IQPGIAPLRQRLSQQVEFVLWLPPGWQLSVAQRKRLHRVLVRRQARTGAQVVSCDDWLLLPTGKRLWRQKGRLDPLLDRA TGEAEGPLWIQRNLLQQLGEPPEQVQARPAWRAHLFETVGAEAWAHVALPLAISPPVELPPAQPAQPKGNPLVSVLIPSG GFHKPIGGRNTMLLRHCLTCLLQRSDYRELEIVLIDGGELSAAELEEFENLIGYGLGPGRWRHGRSDLSYSYSQRINQAA AAARGEFLLQLNDDTELLEPGAIGSMLAHAQEPQIGVVGALLLYPGGRVQHAGVAVDNLAPRHAWVGCWPNRLPPGLLAA ARQFQAVTAAVSLCSAELWQQLGGLRNDLPINYGDVDFCLRARQRGHAVVLDPASRWTHFESASRSTAGIPPELPRFREL WSTELGGRWSIDPYVSRWRELMLQKG >Mature_506_residues MQTMGHGNGCQPVHPLLGSAAGVHYGLPGFRTAVTSPAQGDDWFSKFKRWRLAKAVRLIKELEIYRNFFPADLIRQWLIG IQPGIAPLRQRLSQQVEFVLWLPPGWQLSVAQRKRLHRVLVRRQARTGAQVVSCDDWLLLPTGKRLWRQKGRLDPLLDRA TGEAEGPLWIQRNLLQQLGEPPEQVQARPAWRAHLFETVGAEAWAHVALPLAISPPVELPPAQPAQPKGNPLVSVLIPSG GFHKPIGGRNTMLLRHCLTCLLQRSDYRELEIVLIDGGELSAAELEEFENLIGYGLGPGRWRHGRSDLSYSYSQRINQAA AAARGEFLLQLNDDTELLEPGAIGSMLAHAQEPQIGVVGALLLYPGGRVQHAGVAVDNLAPRHAWVGCWPNRLPPGLLAA ARQFQAVTAAVSLCSAELWQQLGGLRNDLPINYGDVDFCLRARQRGHAVVLDPASRWTHFESASRSTAGIPPELPRFREL WSTELGGRWSIDPYVSRWRELMLQKG
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 56267; Mature: 56267
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTMGHGNGCQPVHPLLGSAAGVHYGLPGFRTAVTSPAQGDDWFSKFKRWRLAKAVRLIK CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ELEIYRNFFPADLIRQWLIGIQPGIAPLRQRLSQQVEFVLWLPPGWQLSVAQRKRLHRVL HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHH VRRQARTGAQVVSCDDWLLLPTGKRLWRQKGRLDPLLDRATGEAEGPLWIQRNLLQQLGE HHHHHHCCCEEEECCCEEEECCCHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCC PPEQVQARPAWRAHLFETVGAEAWAHVALPLAISPPVELPPAQPAQPKGNPLVSVLIPSG CHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC GFHKPIGGRNTMLLRHCLTCLLQRSDYRELEIVLIDGGELSAAELEEFENLIGYGLGPGR CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC WRHGRSDLSYSYSQRINQAAAAARGEFLLQLNDDTELLEPGAIGSMLAHAQEPQIGVVGA CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHCCCCCHHHHHH LLLYPGGRVQHAGVAVDNLAPRHAWVGCWPNRLPPGLLAAARQFQAVTAAVSLCSAELWQ HHHCCCCCEEECCEEHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QLGGLRNDLPINYGDVDFCLRARQRGHAVVLDPASRWTHFESASRSTAGIPPELPRFREL HHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHH WSTELGGRWSIDPYVSRWRELMLQKG HHHCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MQTMGHGNGCQPVHPLLGSAAGVHYGLPGFRTAVTSPAQGDDWFSKFKRWRLAKAVRLIK CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ELEIYRNFFPADLIRQWLIGIQPGIAPLRQRLSQQVEFVLWLPPGWQLSVAQRKRLHRVL HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHH VRRQARTGAQVVSCDDWLLLPTGKRLWRQKGRLDPLLDRATGEAEGPLWIQRNLLQQLGE HHHHHHCCCEEEECCCEEEECCCHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCC PPEQVQARPAWRAHLFETVGAEAWAHVALPLAISPPVELPPAQPAQPKGNPLVSVLIPSG CHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC GFHKPIGGRNTMLLRHCLTCLLQRSDYRELEIVLIDGGELSAAELEEFENLIGYGLGPGR CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC WRHGRSDLSYSYSQRINQAAAAARGEFLLQLNDDTELLEPGAIGSMLAHAQEPQIGVVGA CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHCCCCCHHHHHH LLLYPGGRVQHAGVAVDNLAPRHAWVGCWPNRLPPGLLAAARQFQAVTAAVSLCSAELWQ HHHCCCCCEEECCEEHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QLGGLRNDLPINYGDVDFCLRARQRGHAVVLDPASRWTHFESASRSTAGIPPELPRFREL HHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHH WSTELGGRWSIDPYVSRWRELMLQKG HHHCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]