Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 147675480

GI number: 147675480

Start: 1395853

End: 1398309

Strand: Reverse

Name: yddU [C]

Synonym: VC0395_A1313

Alternate gene names: 147675480

Gene position: 1398309-1395853 (Counterclockwise)

Preceding gene: 147673222

Following gene: 147674536

Centisome position: 46.24

GC content: 47.78

Gene sequence:

>2457_bases
ATGAGTGTGAATGTATCAACCGTACAACCACAAAGTATCGGCTTACAAACTCGTTATGCACCACTCGATTGGTGTTACCA
GTTAGCCAGTCAGCATATGGATTACGATGTTGTGATGTGGCAGTCACTGGTGGGAAATTCTCGCTCGATTACCAAGCCCG
ACGATTTTCTTGAGTACTTGCCTTTGACTCAGCGCGAGCATGCCGCGGGCTTTTTCGTACAAGCAGATTCAGCGCCACAG
AGTCTCAATACCTTATTGGTGAGCGCCGAAAAGCTGGTGGCCTTAGTCGCGTTTTCGGTTGACGAAGTGAGTAGCCAGCT
TGTTCGAGGGACGATTACGCCATTACTGATTTTCCATTCTGGCATGGAATCCGCCTTTGCATTTGATGCTTTATTTGATA
ATGACCATCATGGGGTTGTGATTACCGATGATCAAACGCGAATTTTGGCGTGTAATCGTTATTTTGAGCAGCAAACGGGA
TATCAACAAAATGAGCTACTGGGGTTAAAAACCAGTATGTTCAATTCGGGCAAACATTCGCAGCATTTCTATGTGGATAT
GTGGCAGCAATTGCGTGAGCAAGGCGGCTGGAGCGGCACGATTTTATCTCAGCGCGCTTCTGGTGACGTCTGGCCACAAG
ACCTGTCCATTAAACGTTTAAGTCCTCAGAAAGGGCAGATCTTTTATATCGGTTTTACCACGGATCTGGCACCGCATTTG
GATCGCGTACTGGATAAGCAAGCGGGCGATGTCGAATTGCTGACACAATTACCGACGCTGTCTAAATTCAGTGATCAGTT
GAAACAGCGTTTACCTAAGTATCAAACCACCACTGGATTTGTGTTGGCGATACAGCCTAAATTCAGCAGCGATAAATACT
ATGCGCAGATCCGCCGGCTGGCTGCCAGTTTGGCGCAGAACCGGCAAGTGCAACTGTGTGGTTATCACGGTGAAGGGATT
TTTCTGTGTCAGTTGGATGCGGAGAAAAACCTAGAAGCTCAGCCTTTGGTAGGGTTACAGCGCACTTTACGCCAGTTTTT
TATTGAGTTACGACAACGAGGTGGGCAGGAAGCTCATCAAGCCGTTGCTAAGGGGCGTTTAGGGGTTTCGGTGTTAAATG
TGGATACCGATAAAATAGAGCGCCTCGTTCCCCATGCCATCCAAGCCATGTTGGAGCACCACGCGGGGGAAACTCGACAT
ATCAACTTTTATGATCGCGCAATCCATCAGCAGATTGAGCGTCGTAAAACACTGGAAAAATGGGTGCAGAAATGGATAGC
AAATGGCGATGTCGAAGTGTTTTATCAGCCCATTGTGGATAGCCAGAGTTGGTCTGTGGTGAAGTTTGAGGCGCTGTGCC
GTTTTCAAGCTCCTGAGATTTTGCATGCATCAACGCAAGAGTTAATTTCGATAGCCGAAGAGCTGGGGCTGATCAATCAG
TTGGATGAGTTGATTGGCGGCAAAGCCTTAAAGGATCTGCCTAAAATTCACGCCTTATTTGGTCACCATGTGGGAGTCAG
CATCAATCGTTCGTTAAACAGCGACTTGAGTGCTGAGCAGATTTTACAAAGCGTGGTTGACATGCTCGCTGAAACGCCGA
CTTTGGCGAAAAATATCACGGTGGAGTTAACGGAAACGGCTTACTTTGACTCTCAATCACAGGGAGGCGAAGTGCTGCAG
CATTTACGAAATCGTGGCGTCACTGTTGCGATTGATGATTTTGGAACGGGCTTTTCTTCGTTCTCTTACCTCACGGAGTG
TCAGTTTGATTATTTGAAAATCGATCGAGAGTTTGTGACCAATATCGAAGTGGGGTCACGCCGCTATGCCATCGTAAAAA
TGATGACCGATCTTGCCCATACTTTGGGTGTTAAGGTTGTCGCCGAAGGGGTAGAGACTGAGCATGAAGTGTATGTCCTC
AAGTCGCTGGGGGTAGATCTATTACAGGGATTCTTTTTCGCCAAGCCTTTGCCACTGAGTAACCTTATTCATGCCTCGGA
TTATCGTAAACATCTTAAGCTGACCAACCGTGAAGCCGATAAGCAATCAAGCGAAATTACAACACTGCAAAGTTTAGCGT
TTTTCACTCAATATCGGCTCGACCCAGGAGATCCACTCTCGTTGGCGGTGGAATACTTTAACGCGGTGCAGTCCGATGTT
TTACCGGTCGTTACGGCTGGAGAATGTGTCGGCTTGGTGGATAGAGCCGCGTTGAATTTACACCTCACGCCGACGATGGG
CACTGAATTGGAAACGGCACGTGAAGCCGCTATTTGGCGCAAACCCGTCAATCAAATCATGCGCACGCCGCAAGTCAAAC
TGGCTCATGATACAGACCTCAAGCTATTAGCCTCGTTGCTCAAAACTAATCCACCGCCACCTTGGGTTTTAGTCGAGGGT
AATAAATACAAAGGGATTGTGACTGCGCCGCGTCTGCTCGCTTATTTAGCGAGTTGA

Upstream 100 bases:

>100_bases
TTAGGGATAAGTTAACGTTATGCGTCAAAGTTCATTGTATGGGGTGACAAGCTATTCTAAGGTGGTCACAGAATCAACAT
CATCAGTTTAGGGATACCGG

Downstream 100 bases:

>100_bases
TACAGTCAGCAAGGCTGAGAGGAAATATCGGTTCTCCAAAACGCCACTCATAAAAAAGCCCGCTTGGCGGGCTTGGTTTA
GGTTGAATAATGAGTGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 818; Mature: 817

Protein sequence:

>818_residues
MSVNVSTVQPQSIGLQTRYAPLDWCYQLASQHMDYDVVMWQSLVGNSRSITKPDDFLEYLPLTQREHAAGFFVQADSAPQ
SLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTG
YQQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGDVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKYQTTTGFVLAIQPKFSSDKYYAQIRRLAASLAQNRQVQLCGYHGEGI
FLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRH
INFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLINQ
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQ
HLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVL
KSLGVDLLQGFFFAKPLPLSNLIHASDYRKHLKLTNREADKQSSEITTLQSLAFFTQYRLDPGDPLSLAVEYFNAVQSDV
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDLKLLASLLKTNPPPPWVLVEG
NKYKGIVTAPRLLAYLAS

Sequences:

>Translated_818_residues
MSVNVSTVQPQSIGLQTRYAPLDWCYQLASQHMDYDVVMWQSLVGNSRSITKPDDFLEYLPLTQREHAAGFFVQADSAPQ
SLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTG
YQQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGDVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKYQTTTGFVLAIQPKFSSDKYYAQIRRLAASLAQNRQVQLCGYHGEGI
FLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRH
INFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLINQ
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQ
HLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVL
KSLGVDLLQGFFFAKPLPLSNLIHASDYRKHLKLTNREADKQSSEITTLQSLAFFTQYRLDPGDPLSLAVEYFNAVQSDV
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDLKLLASLLKTNPPPPWVLVEG
NKYKGIVTAPRLLAYLAS
>Mature_817_residues
SVNVSTVQPQSIGLQTRYAPLDWCYQLASQHMDYDVVMWQSLVGNSRSITKPDDFLEYLPLTQREHAAGFFVQADSAPQS
LNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGY
QQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGDVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHLD
RVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKYQTTTGFVLAIQPKFSSDKYYAQIRRLAASLAQNRQVQLCGYHGEGIF
LCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHI
NFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLINQL
DELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQH
LRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLK
SLGVDLLQGFFFAKPLPLSNLIHASDYRKHLKLTNREADKQSSEITTLQSLAFFTQYRLDPGDPLSLAVEYFNAVQSDVL
PVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDLKLLASLLKTNPPPPWVLVEGN
KYKGIVTAPRLLAYLAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=256, Percent_Identity=29.296875, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=32.9113924050633, Blast_Score=126, Evalue=7e-30,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=28.0632411067194, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=32.7935222672065, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787541, Length=294, Percent_Identity=29.9319727891156, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=31.3304721030043, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1787055, Length=281, Percent_Identity=29.8932384341637, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI226510982, Length=302, Percent_Identity=31.4569536423841, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87081980, Length=290, Percent_Identity=28.6206896551724, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=27.5, Blast_Score=100, Evalue=7e-22,
Organism=Escherichia coli, GI1788849, Length=213, Percent_Identity=33.8028169014084, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI87082096, Length=123, Percent_Identity=37.3983739837398, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=28.3783783783784, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 91809; Mature: 91678

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNVSTVQPQSIGLQTRYAPLDWCYQLASQHMDYDVVMWQSLVGNSRSITKPDDFLEYL
CCCCCCCCCCHHCCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHC
PLTQREHAAGFFVQADSAPQSLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHS
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS
CCHHHHHHHHHCCCCCCCEEEECCCCEEEEHHHHHHHHCCCCHHHEEEHHHHHHCCCCCC
QHFYVDMWQQLREQGGWSGTILSQRASGDVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKYQTTTGFVLAIQPKFSSDKYYAQIRRL
HHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQ
HHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
AVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEK
HHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
WVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLINQ
HHHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNIT
HHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHCCEE
VELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVT
EEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHHHHCHHHHC
NIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCCHHHHHHHHHCCCCCHH
NLIHASDYRKHLKLTNREADKQSSEITTLQSLAFFTQYRLDPGDPLSLAVEYFNAVQSDV
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDL
CCEEECCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
KLLASLLKTNPPPPWVLVEGNKYKGIVTAPRLLAYLAS
HHHHHHHHCCCCCCEEEEECCCCCCEEHHHHHHHHHCC
>Mature Secondary Structure 
SVNVSTVQPQSIGLQTRYAPLDWCYQLASQHMDYDVVMWQSLVGNSRSITKPDDFLEYL
CCCCCCCCCHHCCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHC
PLTQREHAAGFFVQADSAPQSLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHS
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS
CCHHHHHHHHHCCCCCCCEEEECCCCEEEEHHHHHHHHCCCCHHHEEEHHHHHHCCCCCC
QHFYVDMWQQLREQGGWSGTILSQRASGDVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKYQTTTGFVLAIQPKFSSDKYYAQIRRL
HHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQ
HHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
AVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEK
HHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
WVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLINQ
HHHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNIT
HHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHCCEE
VELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVT
EEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHHHHCHHHHC
NIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCCHHHHHHHHHCCCCCHH
NLIHASDYRKHLKLTNREADKQSSEITTLQSLAFFTQYRLDPGDPLSLAVEYFNAVQSDV
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDL
CCEEECCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
KLLASLLKTNPPPPWVLVEGNKYKGIVTAPRLLAYLAS
HHHHHHHHCCCCCCEEEEECCCCCCEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]