| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is rstA1
Identifier: 147675447
GI number: 147675447
Start: 1119565
End: 1120644
Strand: Reverse
Name: rstA1
Synonym: VC0395_A1066
Alternate gene names: NA
Gene position: 1120644-1119565 (Counterclockwise)
Preceding gene: 147674737
Following gene: 147674635
Centisome position: 37.06
GC content: 45.37
Gene sequence:
>1080_bases ATGAAAAAGCAGATTTTCACTCTTGATGAATTACAACTCGATACAAACGCTTCTCCGTTTGTTTTTGTCGATTATCTTGC TTGGTCGGTTCCTTATGCTTCATTCCGTCACGCGCATAAGTCCGATTTGTCCTCGCTTATCTGGGCGCCTCTTCCTAAGC CTGATTACCGTATGGCTCGCACACCTGAGCAAAAAGAGAAGTTAATCGAGCTTTATAAGCAGAAGTGGAACGTTGCCATG ATGGAACGCTTGGAGGTCTTTTGCCTTCATGTTCTTGGTCTTCGTATGTCGCCTTGGCGCGATAAGGGGCTTTATGGGTA TGAAAACTCATGCCATTTGATGTCTAAGTACTCCAATAAACACGTGGGCTTTGTTGCGCTAGGGGGAAACCGTAATACCT GTTACTTCCAAATTGAGGGAGTAGGGTGTCGAACCGTGTTAGAGCACACCTCTTTATTCCGTCTTCATTGGTGGCTCGAT TTATTAGGTTGCTCTCGTCTGTCTCGTATTGATTTAGCCGTTGATGACTTTCACGGTTTGTTTGGCCGTGAGTACGCCAA AAAAGCCTATTCCGATGACGCCTTTCGCACCGCTAGAGCGGGACGTGCCCCTAACGGTGGTGAGCGATTAGTCTCTGAGC CTAATGGCAAAATCATCAATGAATCTTTCGAGGTAGGCTCTCGTGAATCTCGCATTTACTGGCGTATCTACAACAAGGCT GCTCAGCTTGGTTTAGATATGCACTGGTTTCGTAATGAGGTCGAGCTTAAAGATATGCCTATCGACGTTCTGCTCAATAT CGAGGGGTATTTTGCAGGTTTGTGCGCGTACTCGGCCTCAATTATCAATTCCTTGCCTGTCAAGGTGGTCACAAAAAAGC GTCAAGTGGCGCTTGATATCCACTCACGCATTAAGTGGGCTCGTCGTCAGGTCGGTAAGACGTTGTTTGATATTTCAAAG CATTTTGGTGGTGATTTGGAAAGGGTGTTTGGGGCGTTGATTTCTAAGGAAATTCACGACGATTCACTCAACCTTCCAGA TTCTTATATGAAGTTAATTGATGAAATTATGGGTGATTAA
Upstream 100 bases:
>100_bases GAACATTATAATCCCTGTTTTTTTGGACAGCTGTTTACAATCCCAATATTTTGGGATAACTTATCACTATAAATTGAACT TGACAGGTTTTTGAAGGCTA
Downstream 100 bases:
>100_bases TATGAAATCTCGTTTTGTTGTTTTTGGTGCCTCTCATTCTGAAGGGGTGAGTAAGACTGGTGCTCCTTACCTTATCCCAG TGCTTTTTGTTGGTAAGCCG
Product: RstA1 protein
Products: NA
Alternate protein names: Phage Replication Protein; RstA2 Protein; Replication Initiation Factor Family Protein; Phage Replication Initiation Protein; Transcriptional Regulatory Protein RstA; Replication Protein; Rep-VSK; Phage Replication Initiation Factor; Phage Replication And Integration Protein
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAM MERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLD LLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKA AQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISK HFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
Sequences:
>Translated_359_residues MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAM MERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLD LLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKA AQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISK HFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD >Mature_359_residues MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAM MERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLD LLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKA AQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISK HFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
Specific function: Unknown
COG id: COG2946
COG function: function code L; Putative phage replication protein RstA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41397; Mature: 41397
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMAR CCCCEEEHHHEEECCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC TPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNK CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC HVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGL CEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH FGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKA HHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHCCCCCCEECCHHCCCCCCCEEEEEEEHHH AQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDI HHHCCCHHHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH HSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMAR CCCCEEEHHHEEECCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC TPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNK CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC HVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGL CEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH FGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKA HHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHCCCCCCEECCHHCCCCCCCEEEEEEEHHH AQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDI HHHCCCHHHHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH HSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA