| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147675278
Identifier: 147675278
GI number: 147675278
Start: 1461989
End: 1463980
Strand: Reverse
Name: 147675278
Synonym: VC0395_A1364
Alternate gene names: NA
Gene position: 1463980-1461989 (Counterclockwise)
Preceding gene: 147675030
Following gene: 147674712
Centisome position: 48.41
GC content: 43.22
Gene sequence:
>1992_bases ATGGGTGATCATTTATCGGTGCAAACTGAGCTTCTGACGCTTGAGAAAATCTACACCGACAACTACCAGTTCTCTATTCC CAGCTATCAACGTCCTTATGTCTGGTCAGATGATGATGTCTTGCTGCTGTTCAGAGATATTAAAGAAGCGTGTCGATTAA AAGAGCCAAACTACTTTATCGGCACCATCCTGTCGTCTCGCATTGAACAAGATGGAGAGCGGATCTATGAGTTGATCGAT GGTCAGCAACGCACGACAACGCTAATGCTCATGACCATTGCTTTCAAGTACGCAGGCATTAAATCCGATCTTGCAGGGCT TGCTGTTTATACATCGAGTGATGGTGAAGATAAGCCACGTCTCCAATTTTCAATTCGTGAGCAAGTTCAGCAGCTTTTAG GTGGTCTAGCGGGGCTTAAGAACTATCAAGTGCCGTCTAAGGAAACGATCGCTGACAATGCTTATTTGAAACAGATGGGC GTGGCGTTAGACGTATTGACCAAAGAAGTAGAGAAGCTCAAATCAGACGATGGGGTGAGCGCCGAAGCTATGGGGGATTA CCTCTACCGCCAAGTTCAATGGGTAAATAACATTGTGCCAACACAAATGGACTTAAACCGATTGTTTGCCACCATGAATA CCGCTGGCATTCAATTAGAACAAGCGGACATTCTAAAGGCGAAGCTGTTCAAGCATATCCATACTGACAAAGCACAGTAT GATGCAATGTGGGTGGCGTGTGAGCATCTGGAAAACTATTTTGAACGCAATGTACGCAAAGTATTTCCTAATGCGGATTG GTACCATATTGAACCCGAACATTTGGCGTCTTTTGATGCTGAACGTTTCGCTGCAAAAGATGAAACGTCAGAGGCGTTGT CTGGCTTGTCGATTGCTGAGCTAGCGTCACAAGTTAAAGCAAGTTCAATTCCTGATAACACCGAGCAAGAGAAGTTTGAA ACTTACGACTTGGACGTTGAAACAGTTTATTGTCGCCCGATCATCAAGTTCCCGCTGTTATTGATTCACGCTTATCGAGT CTACTTAGCGCTTAATGATCATAATGATATTGAACCACGTCTGCATAGCGATCGCTTGTTGGAGATATTCGACCCACTTA TCAACGGTGATGAGCAATCGGTAAAGCTGTTTATTGAAACGCTATGGCAGGTTCGCTACCAGTTTGACCGTTGGGTTGTA AAATGGGTTGAATGTGATGATGCGACAGATGCGCAGCTCGGCTTAACGTATCAATCTCGCAGCAAGTCGAATGACACTTA CTACATCAACCGAACGCAGAAAGAGCTGACGGATATTGTGCTTTTGCAAAGTGTTCGCAACTTTACCGGTGAGCGCAGCG CCCAGTATTGGTTAACACCATTTCTTTCAGGCTTGATCCGTTCGAGTATCAAGCAAGACTCTGTCGCGTTAGAGCTACTA GAAAACATTGACAACAAAATGTCATTGTCTGTTGATACTCAAAAAGAGGCCAGCTTTGCACTCGCTGAAGGCATAGAGCC AAACTGCCAGAGTTGGCAATCTCAATCGACATATTTTGCAAAGTCGTTAGGTACGAGCTTTGAGCATTACTGGTTTCAAA AACTTGAATATTTGATTTGGAAGAAAATGAAGGCGTCAGAATCTTCATTGCCTTCTGAAGAATTGAATAAGTTTAAAAAG TACCGGATTACATCCAAAAACTCAGTAGAACATGTTCATCCTCAAAATGATGAGTATAACAGTAGGTTAGACTGTGAAAC GTTAAACTCATTTGGAAATCTAGTGCTACTGAGTCCAGGTGAAAACTCGTCTTATAGCAATCAAGATGTTGACAAGAAAC GCATCGACTTCGAGAGAAAATCCCACTTTGACGCACTGAAATTAAGAGAGATATTCGGTGTGAAAGGTCAGGGACTGTGG GGCAAACAGCAGATAGATAACCATCTAGAAGACATGATGGCAGTATTTGCTCAGCACTATAAACATCAATAA
Upstream 100 bases:
>100_bases AAAGTGTCTCAATACTTTGGCCTTGATATAGACAAGCAAGATTATGCCAATCAATTTGGCCCTGCATTTAGCCAACACAT CTCTGCGTTAGGAGCAAAAC
Downstream 100 bases:
>100_bases AAACTTCGAGTCATCAAACTAAACAACGTGGTATTTATGGTTAGTAAAACAAATGAACAGGCGCTAGAGGCCGCAATCGA AAAAGGTTTAGCAGGTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 663; Mature: 662
Protein sequence:
>663_residues MGDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFIGTILSSRIEQDGERIYELID GQQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPRLQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMG VALDVLTKEVEKLKSDDGVSAEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQY DAMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAELASQVKASSIPDNTEQEKFE TYDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPRLHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVV KWVECDDATDAQLGLTYQSRSKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELL ENIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIWKKMKASESSLPSEELNKFKK YRITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPGENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLW GKQQIDNHLEDMMAVFAQHYKHQ
Sequences:
>Translated_663_residues MGDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFIGTILSSRIEQDGERIYELID GQQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPRLQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMG VALDVLTKEVEKLKSDDGVSAEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQY DAMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAELASQVKASSIPDNTEQEKFE TYDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPRLHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVV KWVECDDATDAQLGLTYQSRSKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELL ENIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIWKKMKASESSLPSEELNKFKK YRITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPGENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLW GKQQIDNHLEDMMAVFAQHYKHQ >Mature_662_residues GDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFIGTILSSRIEQDGERIYELIDG QQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPRLQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMGV ALDVLTKEVEKLKSDDGVSAEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQYD AMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAELASQVKASSIPDNTEQEKFET YDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPRLHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVVK WVECDDATDAQLGLTYQSRSKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELLE NIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIWKKMKASESSLPSEELNKFKKY RITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPGENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLWG KQQIDNHLEDMMAVFAQHYKHQ
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76658; Mature: 76527
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFI CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCEEEHHHHHHHHCCCCCCHHH GTILSSRIEQDGERIYELIDGQQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCC LQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMGVALDVLTKEVEKLKSDDGVS EEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC AEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHH DAMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAE HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHCCCCHHHHHCCCHHHH LASQVKASSIPDNTEQEKFETYDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPR HHHHHHHCCCCCCCCHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCC LHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVVKWVECDDATDAQLGLTYQSR CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCC SKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELL CCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ENIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIW HCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHH KKMKASESSLPSEELNKFKKYRITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPG HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCC ENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLWGKQQIDNHLEDMMAVFAQHY CCCCCCCCCCHHHHHCHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH KHQ CCC >Mature Secondary Structure GDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFI CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCEEEHHHHHHHHCCCCCCHHH GTILSSRIEQDGERIYELIDGQQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCC LQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMGVALDVLTKEVEKLKSDDGVS EEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC AEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHH DAMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAE HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHCCCCHHHHHCCCHHHH LASQVKASSIPDNTEQEKFETYDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPR HHHHHHHCCCCCCCCHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCC LHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVVKWVECDDATDAQLGLTYQSR CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCC SKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELL CCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ENIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIW HCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHH KKMKASESSLPSEELNKFKKYRITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPG HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCC ENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLWGKQQIDNHLEDMMAVFAQHY CCCCCCCCCCHHHHHCHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH KHQ CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA