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The map label for this gene is oppB [H]

Identifier: 147675147

GI number: 147675147

Start: 651196

End: 652116

Strand: Direct

Name: oppB [H]

Synonym: VC0395_A0610

Alternate gene names: 147675147

Gene position: 651196-652116 (Clockwise)

Preceding gene: 147673391

Following gene: 147674611

Centisome position: 21.53

GC content: 46.47

Gene sequence:

>921_bases
ATGCTTAAATTCATAGCAAAAAGGATATTTGAAGCAATTCCAACGATGTTGGTGTTGATTACTATATCTTTCTTTCTTAT
GCGCTACGCGCCAGGTAACCCATTCTCTTCAGAACGCCCTCTGCCGCCAGAAGTGATGGCCAACATCAATGCCAAATATG
GCCTAGATAAACCCGTTTCTGAACAGTATTTAACCTATTTGACCAACATTGTTCAGGGTGATTTTGGCCCATCGTTTAAG
TACAAAGACTATACGGTGAATGAGCTTATCGCCAGTGCACTGCCTGTTTCCGTGAAAATTGGTCTCGCCGCATTTGTGTT
TACTGTGATCATGGGGGTAACGGTCGGAACCATTGCCGCCCTGAAGCAGAATACGTGGATAGACTACACCATCATGTCGA
CCGCCATGTTAGGGGTGGTGATGCCCTCGTTCGTGTTAGCGCCAGTACTCATATATATCTTCGCTATCCAGTTTAGTTTA
TTCCCTGCCGGTGGCTGGCAAGACGGTGGGTTTGAGTATATGGCGTTGCCGGTTTTGGGTATGTCACTGCTCTACGTCGC
GACATTTGCGCGTATTACTCGTGGTTCGATGATTGAAACCTTGAACAGTAACTTCATTCGTACCGCACGTGCGAAAGGTT
TGAGCTATGGCTATATCGTGGTCAAGCATGCGTTAAAACCTGCACTGCTGCCTGTGGTTTCTTACATGGGACCCGCTTTC
GTCGGTATTATCACAGGTTCGGTTGTTATTGAGACCATTTTTGGTTTGCCCGGCATTGGCAAGCTCTTCGTTAACGCCGC
CTTCAACCGAGATTATTCTCTGGTGATGGGGGTAACGATCCTGATCGGTTTCCTATTTATTCTGTTTAACGCGATTGTCG
ATATTCTCCTCGCTTACATCGATCCGAAGATTCGCTACTAA

Upstream 100 bases:

>100_bases
CATTCGTCGGGGACAAAACTATAAATAACGTAGACGCTGCATGTGAAATTCACGTGCAGGGTCTTTGCATTTCCTTGTCA
CAGATTGAAAGAGTGAGCTT

Downstream 100 bases:

>100_bases
TAGGACTTAGATAATGTTGACGAAAAAAGAAAATTTAGCGGCGATTGAAAACTTCTCACAAAACCTTGAGATTCAAGGTC
GCAGCCTGTGGCAAGACGCG

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFK
YKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSL
FPAGGWQDGGFEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY

Sequences:

>Translated_306_residues
MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFK
YKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSL
FPAGGWQDGGFEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY
>Mature_306_residues
MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFK
YKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSL
FPAGGWQDGGFEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=67.9738562091503, Blast_Score=429, Evalue=1e-122,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=34.4155844155844, Blast_Score=203, Evalue=9e-54,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=32.8402366863905, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=32.5806451612903, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=28.1767955801105, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=27.5757575757576, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=27.5092936802974, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33619; Mature: 33619

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHH
EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMALPVLG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
MSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHH
EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMALPVLG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
MSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]