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The map label for this gene is oppC [H]

Identifier: 147674611

GI number: 147674611

Start: 652130

End: 653032

Strand: Direct

Name: oppC [H]

Synonym: VC0395_A0611

Alternate gene names: 147674611

Gene position: 652130-653032 (Clockwise)

Preceding gene: 147675147

Following gene: 147674302

Centisome position: 21.56

GC content: 49.72

Gene sequence:

>903_bases
ATGTTGACGAAAAAAGAAAATTTAGCGGCGATTGAAAACTTCTCACAAAACCTTGAGATTCAAGGTCGCAGCCTGTGGCA
AGACGCGCGTATTCGCTTTATGCGTAACAAAGCCGCGATGGTCAGCCTGTTTGTTTTGATGTTAATCACCCTGGCAGTCG
TCTTTCTGCCGATGTTTTCCGCTTACAGTTATGAAGATACGGACTGGTATGCCATGCACGCTGGACCTTCAGCGGAGCAC
TGGTTTGGTACTGATGCTCTTGGTCGCGACCTCTTTGTGCGCACGCTCGTGGGTGGTCGTATCTCACTGATGGTCGGCAT
CATGGGGGCATTGGTTGCAGTACTGATCGGTACTTTGTATGGCGCGGCCTCAGGTTTTATCGGTGGCCGTACTGACCGTG
TAATGATGCGTATTCTGGAAATTCTGTACGCTATCCCATTCATGTTCTTGGTGATTGTATTAGTGACGTTTTTTGGTCGT
AACATCGTGCTGATCTTCGTCGCGATTGGGGCAATCGCATGGCTGGATATGGCGCGTATTGTGCGCGGCCAAACCTTGAG
CCTACGTAGCAAAGAGTTTATCGAAGCGGCGCATGTGTGTGGTGTGAGTAAGTGGAACATTATTACGCGCCATATTGTGC
CAAACGTATTGGGCATTGTAGCGGTTTACTCCACCCTGCTGATCCCAAGCATGATTTTGACCGAATCTTTCCTTTCTTTC
CTTGGTCTTGGTGTTCAAGAGCCGATGACAAGCTGGGGCGCGCTGTTACAAGAGGGCGCTAACACAATGGAAGTGGCTAT
TTGGCAACTGCTATTCCCCGCCGCATTCATGGTGTTGACCTTGTTCTGCTTTAACTATGTCGGCGACGGTCTGCGTGACG
CGCTCGATCCAAAAGACAGATAA

Upstream 100 bases:

>100_bases
ACGATCCTGATCGGTTTCCTATTTATTCTGTTTAACGCGATTGTCGATATTCTCCTCGCTTACATCGATCCGAAGATTCG
CTACTAATAGGACTTAGATA

Downstream 100 bases:

>100_bases
ACCAAGAAGAATAAAAAGGAAGCAATGATGAGTTTATTAGATGTCAAAGATCTGCGCGTAGAATTCTCTACCCAAGACGG
TATTGTCACCGCAGTGAACG

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLTKKENLAAIENFSQNLEIQGRSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEH
WFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGR
NIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR

Sequences:

>Translated_300_residues
MLTKKENLAAIENFSQNLEIQGRSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEH
WFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGR
NIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR
>Mature_300_residues
MLTKKENLAAIENFSQNLEIQGRSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEH
WFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGR
NIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=67.8807947019868, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1787054, Length=280, Percent_Identity=41.4285714285714, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1787760, Length=280, Percent_Identity=36.7857142857143, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI1789889, Length=223, Percent_Identity=34.0807174887892, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=34.070796460177, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1789964, Length=272, Percent_Identity=33.0882352941176, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787549, Length=279, Percent_Identity=27.9569892473118, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33362; Mature: 33362

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKKENLAAIENFSQNLEIQGRSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFS
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLY
HCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR
HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC
>Mature Secondary Structure
MLTKKENLAAIENFSQNLEIQGRSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFS
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLY
HCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR
HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]