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The map label for this gene is tcpR

Identifier: 147674994

GI number: 147674994

Start: 385152

End: 385607

Strand: Direct

Name: tcpR

Synonym: VC0395_A0357

Alternate gene names: 147674994

Gene position: 385152-385607 (Clockwise)

Preceding gene: 147675545

Following gene: 147674167

Centisome position: 12.74

GC content: 28.07

Gene sequence:

>456_bases
ATGACTAGCATATGGTTACATGAGTCAGATTTTAGATATGTTAACTTAGATGTAGAAAGATACCAAAAAAAATATCGTTT
GACATTGACTAATGGAAATAAGTACGTATTTATTAAAGATAAAGAAGATATATCTGATGTTAATCCATTTATCCCTTATA
TTCTCATGGAAGAAGGAATGAATAATGTATTAGTAAAATCAGATGATTACAAAGATATCCTCATTTATCAAGGCGTCAAT
ATTCAATGTCTGGATTTTCTTAATGATAATGATATATCCGTTGAGAAATTAGTTGATTTTGAAACAGTAGAACTTAAAGC
AGATGAGCTAAATAAAATAAAAGCACGAAGGTTGGATGCACAACTGATTGAAGATGAAGTCAAAAATAATAAAGTGTTTA
TTATTGGATTCATTGCTATTGTAATAATTAGTATCGGCGTATTTTGGTTAATGTGA

Upstream 100 bases:

>100_bases
GGTGGTACTGAAAATAAGAAATCGGCTCGTTATATTGCTGTGCTTGTTGGTGCAAGCAGTTACAAAACCAATGATCTTGC
TAGTAATAGAGTAAATATAT

Downstream 100 bases:

>100_bases
TTATGAAGATTAGCAGTTTGAAGAAGGGAAGCAATTTCAGTATTAATATAAAAAATATAAAGCTTGATAAAAAATTGTTA
GTGGCAATTATTTTTTTAGT

Product: toxin co-regulated pilus biosynthesis protein R

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpR

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGMNNVLVKSDDYKDILIYQGVN
IQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDAQLIEDEVKNNKVFIIGFIAIVIISIGVFWLM

Sequences:

>Translated_151_residues
MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGMNNVLVKSDDYKDILIYQGVN
IQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDAQLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
>Mature_150_residues
TSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGMNNVLVKSDDYKDILIYQGVNI
QCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDAQLIEDEVKNNKVFIIGFIAIVIISIGVFWLM

Specific function: Involved in TCP pilus biogenesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TCPR_VIBC3 (A5F396)

Other databases:

- EMBL:   AF325733
- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F396
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0357
- HOGENOM:   HBG264516
- ProtClustDB:   CLSK793809
- BioCyc:   VCHO345073:VC0395_A0357-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17764; Mature: 17633

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x16d77a80)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
CCEEEEECCCCEEEEEEHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHEEECCC
NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
CCEEEECCCCCEEEEECCCCEEEEEECCCCCCCHHHHCCEEEEEEEHHHHHHHHHHHHHH
QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
TSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGM
CEEEEECCCCEEEEEEHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHEEECCC
NNVLVKSDDYKDILIYQGVNIQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDA
CCEEEECCCCCEEEEECCCCEEEEEECCCCCCCHHHHCCEEEEEEEHHHHHHHHHHHHHH
QLIEDEVKNNKVFIIGFIAIVIISIGVFWLM
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11179381