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The map label for this gene is rnfD

Identifier: 147674988

GI number: 147674988

Start: 573097

End: 574143

Strand: Reverse

Name: rnfD

Synonym: VC0395_A0535

Alternate gene names: 147674988

Gene position: 574143-573097 (Counterclockwise)

Preceding gene: 147674223

Following gene: 147675771

Centisome position: 18.99

GC content: 53.49

Gene sequence:

>1047_bases
GTGGCCTTCTTTATTGCTAGCTCCCCACATTTACGCAGTAAGCGCAGCACGGCTGACGTTATGCGTTGGGTATTAGTCTG
CGCACTGCCCGGCCTGATCGCTCAGACTTACTTTTTTGGCTACGGCACACTGATCCAGTTACTGCTGGCCATCTCGGTCG
CAGTGGCACTCGAAGCGGGCATTATGCTGCTGCGTAAACGATCACCAATCTCAGCACTGCGCGATTACAGCGCGGTGGTT
ACCGCATGGTTACTCGCGGTCGCTATCCCGCCCCTCTCACCATGGTGGGTCGTCGTGATCGGTCTGATTTTTGCGATCGT
GATTGCCAAACATTTGTATGGTGGACTTGGGCAAAACCCTTTTAACCCAGCGATGATCGCCTACGTAGTGTTGTTGATCT
CCTTTCCGGTTCAGATGACCAGTTGGATGGCGCCCATCAAATTAACCGCCGAACCCAGCTCACTGGTAGACTCGTTCTCA
CTGATCTTCGGCGGTTTTGACAGTGATGGTCTATCGCTACAGCAAATCCGTACGGGCATCGATGGCATTACCATGGCAAC
CCCGCTCGATGCGATCAAGACCTCGCTCAAAGCAGGACACACCATGAGTGAAACCTTGACCCAGCCTCAGTTTAGTGGCT
TTGCGGGTATCGGTTGGGAATGGGTCAATATTGCCTATCTACTCGGTGGCCTGATTCTGCTGAAACTGCGTATTATCCGT
TGGCACATTCCAGTGGCAATGCTGGCAGGTTTGGTTTTCACAGCGTTACTGGCACAACTTTTTGCACCGGGAACAACCGC
GTCCCCCATGATCCACCTACTCTCGGGCGCAACCATGCTGGGCGCATTTTTTATCGCGACCGATCCGGTCAGCGCCAGCA
CGACGGATAAAGGCCGCTTGATTTACGGTTTCTTCATCGGTGCAATGGTGTTTCTGATCCGTAGTTGGGGCGGCTTCCCT
GATGGTGTCGCCTTTGCCGTACTGCTCGCCAACATGTGCGTACCGCTGATTGACTACTACACCAAACCGAGAACTTACGG
ACACTAA

Upstream 100 bases:

>100_bases
ACCCGAAAAAAGCTGCGGTGGCCGCCGCGATTGCTCGCGCCAAAGCACGGAAAGCCGCCCAACAATCATCATCTAATTTA
AACGCTGAGGAGAAAGACTA

Downstream 100 bases:

>100_bases
GAGCGCGACTTATGCTGACAGCAATTCGAAAAAATGGCCTGATCCTCGCCGTCTTTGCCTGTGTTTCAACGGGTTTGGTG
GCGCTGACATACGCCCTCAC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAFFIASSPHLRSKRSTADVMRWVLVCALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVV
TAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFS
LIFGGFDSDGLSLQQIRTGIDGITMATPLDAIKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
WHIPVAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGH

Sequences:

>Translated_348_residues
MAFFIASSPHLRSKRSTADVMRWVLVCALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVV
TAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFS
LIFGGFDSDGLSLQQIRTGIDGITMATPLDAIKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
WHIPVAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGH
>Mature_347_residues
AFFIASSPHLRSKRSTADVMRWVLVCALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVVT
AWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSL
IFGGFDSDGLSLQQIRTGIDGITMATPLDAIKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIRW
HIPVAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFPD
GVAFAVLLANMCVPLIDYYTKPRTYGH

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=58.4527220630373, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_VIBC3 (A5F2R1)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F2R1
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0535
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- ProtClustDB:   PRK00816
- BioCyc:   VCHO345073:VC0395_A0535-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 37604; Mature: 37473

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1772072c)-; HASH(0x16f73fc8)-; HASH(0x18aa7834)-; HASH(0x18482744)-; HASH(0x17dacb74)-; HASH(0x1832eb60)-; HASH(0x1803f050)-; HASH(0x1834c8ac)-; HASH(0x1797ba0c)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFIASSPHLRSKRSTADVMRWVLVCALPGLIAQTYFFGYGTLIQLLLAISVAVALEAG
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMLLRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGI
CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
DGITMATPLDAIKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
CCCCHHCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WHIPVAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IYGFFIGAMVFLIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure 
AFFIASSPHLRSKRSTADVMRWVLVCALPGLIAQTYFFGYGTLIQLLLAISVAVALEAG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMLLRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGI
CCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
DGITMATPLDAIKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR
CCCCHHCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WHIPVAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IYGFFIGAMVFLIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA