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The map label for this gene is rnfC [H]

Identifier: 147674223

GI number: 147674223

Start: 574143

End: 576464

Strand: Reverse

Name: rnfC [H]

Synonym: VC0395_A0536

Alternate gene names: 147674223

Gene position: 576464-574143 (Counterclockwise)

Preceding gene: 147674952

Following gene: 147674988

Centisome position: 19.06

GC content: 52.93

Gene sequence:

>2322_bases
ATGTTGTCATTAATCGAACAAATCAAATCAGGTAAGCTTTGGGACTTCCCCGGCGGCATTCATCCGTTTGAAAATAAACA
CCAATCCAACCGTCAGCCGATTATCAATGCGAGCATTCCGAATGAGCTGGTACTGCCACTCAAGCAGCACATTGGTAAGG
CCGGCGATCTACTGGTGAAAGTGGGCGATCGCGTTTTAAAAGGCCAGCCGCTGACGCAATATACGTCGACCTTCATGTTG
CCGATTCATGCACCAACTTCAGGCGTTATTAGCGCTATTGAGCCACGTACCGTCGCTCACCCTTCCGGTTTGAGTGAGCT
GTGTATCGTACTAACGCCAGACCAACAAGAAGAGTGGTTTGAGTTGCAGCCGCAGCCGGATTTTCAGCAGTTGACCCCTG
AAACACTGTTGGAGCTGATCCGTCAGGCCGGTATCTCAGGTATGGGTGGCGCAGGTTTCCCAACTGCGAAGAAACTGCAA
TCTGGGCTTTCGCGCACCGAAATCTTGATCATTAACGCCGCCGAGTGTGAGCCTTATATCACCGCAGATGATGTGTTAAT
GCGTCAATATGCCCATGAAATTATTCAGGGAATCGAGATTGTTGAGCACATTCTAAAGCCTAAACTCACCATCATCGGGA
TTGAAGATAACAAACCGGAAGCCGTTGCAGCGCTGCAGCAAGCCGCGCAAGACAAACCGATGGTGATCCGCGTTATCCCA
ACCAAATACCCGTCTGGTGGTGAGAAACAACTCATCAAAATCCTGACTAACTTGGAAGTTCCGAAAGGTGGTATTCCTGC
CGATATCGGTTTAATGGTGCAAAATGTCGGCTCATTGCAGGCGATTGCGCGCGCGATTGTACATGGTGAACCTCTGATCC
GCCGTGTAGTGACACTCACCGGCGATTGTTTCCGTAAACCACGTAACGTTTGGGCATTGCTCGGCACGCCTGTCCAAGCG
CTGCTCAATGAGTTTGGCTACAAAGCCGATAAAAAGCTGCCGCGTCTCATCATGGGCGGCCCGATGATGGGCTTCACTCT
ACCCCATGCGCAAGTGCCGATCACTAAAACCGCTAACTGTATTCTTGCGCCTACACGCAATGAGTTAACCAGTAGTGATA
ATGAGATGGCGTGTATCCGCTGCGGTCAATGCGCCGAAGCCTGTCCGGTATCGCTATTACCACAGCAGTTACAGTGGCAC
GCGAAAGCCGAAGAATTTGATAAGTGCGAAGAGCTCGATCTAAAAGACTGTATTGAATGCGGCGCTTGTGCTTATGTCTG
CCCGAGTGAAATTCCGTTGGTGCAGTACTATCGCCAAGCCAAAGCAGAAATTCGTACCCGCAGCTTAGAAGCGGAAGCCG
CTGAACGAGCAAAAGCACGCTTCGAAGAGAAAAAAGCGCGCATGGAGCGGGATAAAGCGGAGCGTGAAAATCGCTTCAAG
CAAGCGGCGGAAGATCGCCGCAAAGAGATGCAGCAGCAAGGTGGCTCCGATGCGATTGCGGCGGCCATTGAACGGGTTAA
AGCCCAAAAAGCTCAGCTCGAGCCAACCGATAACAGCGTAAAACCGGCTATTGCGGCTGCGATTGCACGCGCTAAAGCCA
AACAGGCAGAAGCAGCGCAAAGTGGTGCCAGTGAGCCTGATAATAGTGAAATGGCTAAACTACGTGAAGAGCGTAAACGC
CAAGCTCGGGAACGCAAGGCACAAAAAGGTGAAGTGACTGAAGCATCAACCAGTGATGGTGCGGACGATAAGAAATCGGC
TGTCGCTGCAGCGATTGCTCGCGCCAAAGCGCGTAAAGCGGAGCAGCAGGAAACCGAAAGCGCAGCTCAGCCAGCACAAG
CCACACCAAGCAGTGACGATGCTGATCCGAAAAAAGCTGCGGTCGCCGCCGCCATTGCTCGCGCCAAAGCGCGTAAAGCA
GAGCAGGGAACCGAAAGCACAGCTCAGCCAGCACAAGCCACGCCAAGCAGTGACGAGGCTGATCCGAAAAAAGCTGCGGT
CGCTGCCGCTATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAACCGAAAGCACAGCTCAGCCAGCTCAAGCCA
CGCCAAGCAGTGACGACGCTGACCCGAAAAAAGCTGCGGTCGCTGCCGCTATTGCTCGCGCTAAAGCGCGTAAAGCAGAG
CAGCAGGAAACCAAAAGTACAGCTCAGCCAGAACAAGCCACGCCAAGCAGTGACGACGCTGACCCGAAAAAAGCTGCGGT
GGCCGCCGCGATTGCTCGCGCCAAAGCACGGAAAGCCGCCCAACAATCATCATCTAATTTAAACGCTGAGGAGAAAGACT
AG

Upstream 100 bases:

>100_bases
CCACGCCAGAGAGCTGGAAGTGGCAACTCAATGCCATCCCTGTGGTCAATGTGACCGATTCTGCGCCTGCTGCGCAGAAA
AGTGCGAATTAAGGATGGGT

Downstream 100 bases:

>100_bases
TGGCCTTCTTTATTGCTAGCTCCCCACATTTACGCAGTAAGCGCAGCACGGCTGACGTTATGCGTTGGGTATTAGTCTGC
GCACTGCCCGGCCTGATCGC

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 773; Mature: 773

Protein sequence:

>773_residues
MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFML
PIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQ
SGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMVIRVIP
TKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQA
LLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWH
AKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERDKAERENRFK
QAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKAKQAEAAQSGASEPDNSEMAKLREERKR
QARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQATPSSDDADPKKAAVAAAIARAKARKA
EQGTESTAQPAQATPSSDEADPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAE
QQETKSTAQPEQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD

Sequences:

>Translated_773_residues
MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFML
PIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQ
SGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMVIRVIP
TKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQA
LLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWH
AKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERDKAERENRFK
QAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKAKQAEAAQSGASEPDNSEMAKLREERKR
QARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQATPSSDDADPKKAAVAAAIARAKARKA
EQGTESTAQPAQATPSSDEADPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAE
QQETKSTAQPEQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD
>Mature_773_residues
MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFML
PIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQ
SGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMVIRVIP
TKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQA
LLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWH
AKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERDKAERENRFK
QAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKAKQAEAAQSGASEPDNSEMAKLREERKR
QARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQATPSSDDADPKKAAVAAAIARAKARKA
EQGTESTAQPAQATPSSDEADPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAE
QQETKSTAQPEQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=780, Percent_Identity=50.6410256410256, Blast_Score=569, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 83372; Mature: 83372

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVK
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHH
VGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWF
HHHHHHCCCCHHHHHCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHC
ELQPQPDFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQSGLSRTEILIINAAECEPYI
CCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCC
TADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMVIRVIP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
TKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIRRVVTLT
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANC
HHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCE
ILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDLKDCIEC
EECCCCHHHCCCCCCEEEEECCCHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHH
GACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERDKAERENRFK
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKAKQAEAAQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SGASEPDNSEMAKLREERKRQARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EQQETESAAQPAQATPSSDDADPKKAAVAAAIARAKARKAEQGTESTAQPAQATPSSDEA
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
DPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QQETKSTAQPEQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVK
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHH
VGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWF
HHHHHHCCCCHHHHHCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHC
ELQPQPDFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQSGLSRTEILIINAAECEPYI
CCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCC
TADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMVIRVIP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
TKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIRRVVTLT
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANC
HHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCE
ILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDLKDCIEC
EECCCCHHHCCCCCCEEEEECCCHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHH
GACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERDKAERENRFK
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQLEPTDNSVKPAIAAAIARAKAKQAEAAQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SGASEPDNSEMAKLREERKRQARERKAQKGEVTEASTSDGADDKKSAVAAAIARAKARKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EQQETESAAQPAQATPSSDDADPKKAAVAAAIARAKARKAEQGTESTAQPAQATPSSDEA
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
DPKKAAVAAAIARAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
QQETKSTAQPEQATPSSDDADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]