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The map label for this gene is cph2 [H]

Identifier: 147674873

GI number: 147674873

Start: 643350

End: 644960

Strand: Direct

Name: cph2 [H]

Synonym: VC0395_A0605

Alternate gene names: 147674873

Gene position: 643350-644960 (Clockwise)

Preceding gene: 147675202

Following gene: 147674084

Centisome position: 21.27

GC content: 44.69

Gene sequence:

>1611_bases
ATGCAAAGCAACCGTGAAATTCTGCTAGTGGATGATGAACCTGCGGTGTTGAATGCCTTAAAGCGCGAGCTGCGTCCTTA
TTTCCCCCATCTACATACCGCCACTTGTGCGCAAGAAGCGTTAGAGCTTTTAAAGCAACATCCAGTACAGATGGTGATTT
CCGATTATCGGATGCCGGGCATGAATGGTGCGGATTTGGTGATAGAGATTAATCGCCGCTATCCGCACATTATGTCGCTT
ATCCTCTCTGGGCAGGCGGATATGAATGGATTATCGCGAGCCTTGAATGAAGGCGATCTGTACAAATTTTTGCTCAAGCC
TTGGGAGCGAAATTATCTGCTGCAAACAATCTTGCAGTGTTTTAGTGAAAAAGAGCGCCGTGAAGAGTTTGATACCGTTT
CCGGACTCAAAACATGGCAAGTACTCAACAAACAGATCTCATTATTACAGTCACTGGCTGACCACCCCTATCTTGTGCTG
ATCATGGAGTGGACGGCGCCGCTGGAGGACCTGCAAAAACAAGCCATTTCGCAACATGTGATCCAGCAACTTCCAGAAAC
TGAGCACATCTATCAAGATGGAGCACGTTGGTTTTGGGTTACTCACCGCTTAACGCCTTGGTATCAAACATTATTTAAGT
TAATTGATAGCTTTCAGAACCCAGCACCTTCAGATAATGCGGCCTTTGATATTGCTCAGCCGCCGCATTGGTGGATTGCC
GATATTGAGTCTTGGCCTGATGTTGAGTTGAAGTTAGTCAATCCGCCATGTGAGAAAAGCGCGTTGGTTGATCATTTCCC
TATCTTTGGGTTGGGCAATGTGGACGAGACGCTGGAAATTAAACAGCTATTGAATATTTATCGTGACCTCCAACTCGGCC
ATTTTTGTGCCTTCTATCAGCCTCAAAAGCACATCGATTCTGGGGGCGTCGTAGCGTTTGAAGCCTTAGCCAGACGAGTG
ATTGGCAAAGGATTGTATGAAATGCCCGATCGTTTTTTCCCGATCTTGGAAAAGTACCATTTGATCCCGACGTTAACTGA
AGTCATGGTGCGCGACATTTTGACCTTTTTAATGACGGAAGATGCGGTCTTACAAGACATCACCATAGGGGTAAATATTC
CGGGAAAAATGCTCACTGACGGCAGTTTTTATCGTTTGTTACTGAGCGTCGCGGAGGAGAAGCAAGCACAACATGCGTTG
CATCGACTCTCTGTTGAGATCACGGAACACGATTTGATTGCGGATTTTGATGCCGCTAAACATGAGATTTATAAGCTAAA
ATCATTAGGAATACGCTGCGCGTTAGATGATTTTGGTACGGGATATTCTGGTTATGAGTACTTGTGTGAAATTCCGTTTG
ATGTAGTGAAAATTGATGGGCGATACATTCAAAGTTTGGGCAAGGCGGAATCAAGTACGGTCATTTTACAATCGATGATT
TCTAGCATTAAATCCTTGTCTATGCAGGTGATTGCAGAATGGGTCGACTCAGATCAGCAATATCAAATTTTACAAGAGAT
GGGATGTGACCTGGTGCAAGGTTATTTAGTTAGCCCGGCTATTTCACCACAACAAGTCCTGAACTATCTCCATAACAAAC
TATCTCCATAA

Upstream 100 bases:

>100_bases
AAGAACACCATGGCAAAATAAAGCTCTGTTCGACAGAAGGGGTCGGAACGCGAGTCTTTGTGACACTGCCACAAGCGGTG
CGTGCTCAAGGAGCCTTCTG

Downstream 100 bases:

>100_bases
AAAATAGGGGAGCGCTATGCAAATGGATAACATGCACGATGAGAAGTTAAACGTCCTGTTACTTGATGATGAAAACGATA
TTTTGAAAGCGCTTAACCGT

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNGADLVIEINRRYPHIMSL
ILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCFSEKERREEFDTVSGLKTWQVLNKQISLLQSLADHPYLVL
IMEWTAPLEDLQKQAISQHVIQQLPETEHIYQDGARWFWVTHRLTPWYQTLFKLIDSFQNPAPSDNAAFDIAQPPHWWIA
DIESWPDVELKLVNPPCEKSALVDHFPIFGLGNVDETLEIKQLLNIYRDLQLGHFCAFYQPQKHIDSGGVVAFEALARRV
IGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDILTFLMTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHAL
HRLSVEITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAESSTVILQSMI
SSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLNYLHNKLSP

Sequences:

>Translated_536_residues
MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNGADLVIEINRRYPHIMSL
ILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCFSEKERREEFDTVSGLKTWQVLNKQISLLQSLADHPYLVL
IMEWTAPLEDLQKQAISQHVIQQLPETEHIYQDGARWFWVTHRLTPWYQTLFKLIDSFQNPAPSDNAAFDIAQPPHWWIA
DIESWPDVELKLVNPPCEKSALVDHFPIFGLGNVDETLEIKQLLNIYRDLQLGHFCAFYQPQKHIDSGGVVAFEALARRV
IGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDILTFLMTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHAL
HRLSVEITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAESSTVILQSMI
SSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLNYLHNKLSP
>Mature_536_residues
MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPGMNGADLVIEINRRYPHIMSL
ILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQCFSEKERREEFDTVSGLKTWQVLNKQISLLQSLADHPYLVL
IMEWTAPLEDLQKQAISQHVIQQLPETEHIYQDGARWFWVTHRLTPWYQTLFKLIDSFQNPAPSDNAAFDIAQPPHWWIA
DIESWPDVELKLVNPPCEKSALVDHFPIFGLGNVDETLEIKQLLNIYRDLQLGHFCAFYQPQKHIDSGGVVAFEALARRV
IGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDILTFLMTEDAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHAL
HRLSVEITEHDLIADFDAAKHEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAESSTVILQSMI
SSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLNYLHNKLSP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=27.7551020408163, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=28.2157676348548, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081743, Length=277, Percent_Identity=27.7978339350181, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1786507, Length=201, Percent_Identity=28.3582089552239, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=27.9352226720648, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=27.6859504132231, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787541, Length=248, Percent_Identity=27.8225806451613, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87081845, Length=229, Percent_Identity=28.3842794759825, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=25.7261410788382, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI226510982, Length=239, Percent_Identity=28.0334728033473, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788849, Length=208, Percent_Identity=25.4807692307692, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787410, Length=168, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787055, Length=249, Percent_Identity=25.7028112449799, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 61454; Mature: 61454

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPG
CCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
MNGADLVIEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQC
CCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
FSEKERREEFDTVSGLKTWQVLNKQISLLQSLADHPYLVLIMEWTAPLEDLQKQAISQHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHH
IQQLPETEHIYQDGARWFWVTHRLTPWYQTLFKLIDSFQNPAPSDNAAFDIAQPPHWWIA
HHHCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEE
DIESWPDVELKLVNPPCEKSALVDHFPIFGLGNVDETLEIKQLLNIYRDLQLGHFCAFYQ
ECCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDILTFLMTE
CHHHCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSVEITEHDLIADFDAAK
CHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHH
HEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAESSTVILQSMI
HHHHHHHHCCCEEEECCCCCCCCCCHHHHHCCHHHEEECHHHHHHHCCCCHHHHHHHHHH
SSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLNYLHNKLSP
HHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MQSNREILLVDDEPAVLNALKRELRPYFPHLHTATCAQEALELLKQHPVQMVISDYRMPG
CCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
MNGADLVIEINRRYPHIMSLILSGQADMNGLSRALNEGDLYKFLLKPWERNYLLQTILQC
CCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
FSEKERREEFDTVSGLKTWQVLNKQISLLQSLADHPYLVLIMEWTAPLEDLQKQAISQHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHH
IQQLPETEHIYQDGARWFWVTHRLTPWYQTLFKLIDSFQNPAPSDNAAFDIAQPPHWWIA
HHHCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEE
DIESWPDVELKLVNPPCEKSALVDHFPIFGLGNVDETLEIKQLLNIYRDLQLGHFCAFYQ
ECCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PQKHIDSGGVVAFEALARRVIGKGLYEMPDRFFPILEKYHLIPTLTEVMVRDILTFLMTE
CHHHCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DAVLQDITIGVNIPGKMLTDGSFYRLLLSVAEEKQAQHALHRLSVEITEHDLIADFDAAK
CHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHH
HEIYKLKSLGIRCALDDFGTGYSGYEYLCEIPFDVVKIDGRYIQSLGKAESSTVILQSMI
HHHHHHHHCCCEEEECCCCCCCCCCHHHHHCCHHHEEECHHHHHHHCCCCHHHHHHHHHH
SSIKSLSMQVIAEWVDSDQQYQILQEMGCDLVQGYLVSPAISPQQVLNYLHNKLSP
HHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]