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The map label for this gene is yafD [C]

Identifier: 147674622

GI number: 147674622

Start: 1945928

End: 1946773

Strand: Reverse

Name: yafD [C]

Synonym: VC0395_A1830

Alternate gene names: 147674622

Gene position: 1946773-1945928 (Counterclockwise)

Preceding gene: 147675404

Following gene: 147673588

Centisome position: 64.38

GC content: 47.87

Gene sequence:

>846_bases
ATGAAAAAACGTTACTGGATGGCTCCATTGTTGATAGCGGCGGCGGGACTGGCCGCTTTCTGGTCTATCTTCACGATTCC
GACTCAACCTGAATTAGTCACTATAGGACGCAATCAGCAAGGCGAACCGCTGTTGTGCTATCAACATCCGCAGTCTGAAG
TTTTGGATCTTGATGGAGAGCTCAATCTGCTCGTTTGGAATATCTATAAACAAAATCGTGCCAATTGGTCAACGCAGCTC
ACCGAATTGAGTCGTGACCAGCAATTACTCTTGCTGCAAGAGGCCAATATGACGCCTGCGTTTAAAGAGTGGATTCATCA
ATTAGGGTGGGATGGCACCCAAGCTCGAGCTTTTGAAGCATTTGGAGAGACGGCTGGAGTAATTAATCTCGCTAAAGTGA
TGCCAACCATGGCTTGTGCTTATACTCAGCTTGAACCGTGGTTGAGGCTGCCTAAATCGGCGATCTACGCACGATATCGT
TTAAGTGATGGGCAAGAGTTAGTCGTAGTCAATCTGCACGCAGTCAACTTCACTTATGGCACCCAAGAGTATCAACAGCA
GTTGATCGCACTACTGGATGAGCTACGTGATTTTACTGGCCCTGTGATTGTGGCGGGCGATTTTAACAGTTGGAGCGAGG
CGCGTATGGCGCTGCTAAGTACTCAGCTTGCCTCCGTAGGATTACAAGAAGTGCGCTTTTCGCCAGATAACCGCACGACG
TTTATCAATGGCTTGCCATTAGATCATGTCTTCTATCGTGGATTGCAGCTTGAAAAAGCAGAAGCGCCCATATCGGACGC
TTCTGATCATAATCCTCTGTTGGTTCGCTTTCGCTTACTCAACTAG

Upstream 100 bases:

>100_bases
CGTACCGGTGAAGAGGATGAAGATGCAATTTAAGCATCCGTCCCTATGATTACTTAATAATAAGGAGCTAAGGCTCCTTA
TTTTGTTTGAGGGTAACTGA

Downstream 100 bases:

>100_bases
CCTATTCAGCGCAGTGTTATGCGCTGAATTTGGTCACATCCACATACAGTTTCAGTTGCTGACCCGCCTTGAGATATTGA
GTGCTGTTTAAATCATTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKKRYWMAPLLIAAAGLAAFWSIFTIPTQPELVTIGRNQQGEPLLCYQHPQSEVLDLDGELNLLVWNIYKQNRANWSTQL
TELSRDQQLLLLQEANMTPAFKEWIHQLGWDGTQARAFEAFGETAGVINLAKVMPTMACAYTQLEPWLRLPKSAIYARYR
LSDGQELVVVNLHAVNFTYGTQEYQQQLIALLDELRDFTGPVIVAGDFNSWSEARMALLSTQLASVGLQEVRFSPDNRTT
FINGLPLDHVFYRGLQLEKAEAPISDASDHNPLLVRFRLLN

Sequences:

>Translated_281_residues
MKKRYWMAPLLIAAAGLAAFWSIFTIPTQPELVTIGRNQQGEPLLCYQHPQSEVLDLDGELNLLVWNIYKQNRANWSTQL
TELSRDQQLLLLQEANMTPAFKEWIHQLGWDGTQARAFEAFGETAGVINLAKVMPTMACAYTQLEPWLRLPKSAIYARYR
LSDGQELVVVNLHAVNFTYGTQEYQQQLIALLDELRDFTGPVIVAGDFNSWSEARMALLSTQLASVGLQEVRFSPDNRTT
FINGLPLDHVFYRGLQLEKAEAPISDASDHNPLLVRFRLLN
>Mature_281_residues
MKKRYWMAPLLIAAAGLAAFWSIFTIPTQPELVTIGRNQQGEPLLCYQHPQSEVLDLDGELNLLVWNIYKQNRANWSTQL
TELSRDQQLLLLQEANMTPAFKEWIHQLGWDGTQARAFEAFGETAGVINLAKVMPTMACAYTQLEPWLRLPKSAIYARYR
LSDGQELVVVNLHAVNFTYGTQEYQQQLIALLDELRDFTGPVIVAGDFNSWSEARMALLSTQLASVGLQEVRFSPDNRTT
FINGLPLDHVFYRGLQLEKAEAPISDASDHNPLLVRFRLLN

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family

Homologues:

Organism=Escherichia coli, GI1786403, Length=228, Percent_Identity=42.9824561403509, Blast_Score=183, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2161_VIBCM (C3LPP2)

Other databases:

- EMBL:   CP001233
- RefSeq:   YP_002810913.1
- ProteinModelPortal:   C3LPP2
- GeneID:   7773423
- GenomeReviews:   CP001233_GR
- KEGG:   vcm:VCM66_2161
- OMA:   TDASDHN
- ProtClustDB:   PRK05421
- GO:   GO:0005737
- HAMAP:   MF_01119
- InterPro:   IPR005135
- InterPro:   IPR022958

Pfam domain/function: PF03372 Exo_endo_phos; SSF56219 Exo_endo_phos

EC number: NA

Molecular weight: Translated: 31895; Mature: 31895

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRYWMAPLLIAAAGLAAFWSIFTIPTQPELVTIGRNQQGEPLLCYQHPQSEVLDLDGE
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCCCCCEEEEEECCCCCEEECCCC
LNLLVWNIYKQNRANWSTQLTELSRDQQLLLLQEANMTPAFKEWIHQLGWDGTQARAFEA
EEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHH
FGETAGVINLAKVMPTMACAYTQLEPWLRLPKSAIYARYRLSDGQELVVVNLHAVNFTYG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCEEEEEEEEEEEEEEC
TQEYQQQLIALLDELRDFTGPVIVAGDFNSWSEARMALLSTQLASVGLQEVRFSPDNRTT
CHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHEEECCCCCEE
FINGLPLDHVFYRGLQLEKAEAPISDASDHNPLLVRFRLLN
EECCCCHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKRYWMAPLLIAAAGLAAFWSIFTIPTQPELVTIGRNQQGEPLLCYQHPQSEVLDLDGE
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCCCCCEEEEEECCCCCEEECCCC
LNLLVWNIYKQNRANWSTQLTELSRDQQLLLLQEANMTPAFKEWIHQLGWDGTQARAFEA
EEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHH
FGETAGVINLAKVMPTMACAYTQLEPWLRLPKSAIYARYRLSDGQELVVVNLHAVNFTYG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCEEEEEEEEEEEEEEC
TQEYQQQLIALLDELRDFTGPVIVAGDFNSWSEARMALLSTQLASVGLQEVRFSPDNRTT
CHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHEEECCCCCEE
FINGLPLDHVFYRGLQLEKAEAPISDASDHNPLLVRFRLLN
EECCCCHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA