| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is hisQ [H]
Identifier: 147674527
GI number: 147674527
Start: 1554913
End: 1555695
Strand: Reverse
Name: hisQ [H]
Synonym: VC0395_A1453
Alternate gene names: 147674527
Gene position: 1555695-1554913 (Counterclockwise)
Preceding gene: 147673397
Following gene: 147674940
Centisome position: 51.44
GC content: 48.4
Gene sequence:
>783_bases ATGTCACCAACAACCCGTAATCCAACTCAGGGAACGAGTCATATGCTGGATTTACAAGGCTATGAAGCCTCTATTCTGAA AGGCGCGCTGCTGACTATTGAAATTGCCGTGCTGTCACTTTTGCTAGCGATGCTGCTAGGCATGTTAGGCGCACTCGCTA AAATGGCACCCTACCGCTGGGCTCGAGCCATTGCGACACTCTATACCACCATCATTCGCGGTATTCCGGATTTAGTACTC ATGATGCTGATTTTCTTTGGTGGGCAGATTTTACTCAACAATGGTCTCAGTTGGTTTAATGAGTTCATCAACCAATGGCT GACAGCCCGAGATCCGAATCATGAATGGGTAGCCTATCTGCCCGATTATGTAGATATCAGCCCTTTTGTCGCGGGCGTGT TAACCATCGGCTTCATTTTTGGGGCTTATATGGCGGAAACGTTTCGTGGCGCGATCCTTGCCGTGGATAAAGGTGAACTC GAGGCGGCGAAAGCTTACGGCATGAGTGCTGCCATGAGCTTTCGGCGAATTTTATTACCGCAGATGATTCGCCATGCTAT TCCTGGTTTTGGCAATAACTGGCTGGTGCTGCTGAAAACGACCGCTCTTGTCTCAATCATCGGCCTTGAAGATATGGTAC GCATCAGTTCACTGGCGGCTGGCTCGACCAAGATGCCGTTTACCTTTTATATGGCGGTGGCCATCATCTTTCTATTTTTT ACCAGTGTGTCGACCGGTTTGCTCAAGCTGCTAGAACGTAAATTCAGTATTCATACGAGGTAA
Upstream 100 bases:
>100_bases CTTCTTATCACTTCGAGTTGCCGTCCACAGGACGGTAGCTTGAAATCATGGATTCGCGATTAAAGCTCACAGTATTTCGG GTTGTTGGCACTCGTTCCTG
Downstream 100 bases:
>100_bases AGATGGACTTTTCTCTGATTATCGACAGTTTGCCTATTTACCTAAGTGGACTTTGGACCACTGTCTGGCTAGTGAGCCTT TCACTCGTAATCGGCTTGCT
Product: amino acid ABC transporter, permease protein
Products: ADP; phosphate; L-histidine [Cytoplasm]; ADP; L-ornithine [Cytoplasm]; L-arginine [Cytoplasm]; L-lysine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSPTTRNPTQGTSHMLDLQGYEASILKGALLTIEIAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPDLVL MMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIGFIFGAYMAETFRGAILAVDKGEL EAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFF TSVSTGLLKLLERKFSIHTR
Sequences:
>Translated_260_residues MSPTTRNPTQGTSHMLDLQGYEASILKGALLTIEIAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPDLVL MMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIGFIFGAYMAETFRGAILAVDKGEL EAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFF TSVSTGLLKLLERKFSIHTR >Mature_259_residues SPTTRNPTQGTSHMLDLQGYEASILKGALLTIEIAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPDLVLM MLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIGFIFGAYMAETFRGAILAVDKGELE AAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFT SVSTGLLKLLERKFSIHTR
Specific function: Part of the binding-protein-dependent transport system for histidine; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4215
COG function: function code E; ABC-type arginine transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788646, Length=243, Percent_Identity=46.5020576131687, Blast_Score=220, Evalue=6e-59, Organism=Escherichia coli, GI1787087, Length=236, Percent_Identity=35.1694915254237, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1788226, Length=237, Percent_Identity=27.4261603375527, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787030, Length=233, Percent_Identity=29.6137339055794, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788645, Length=235, Percent_Identity=27.2340425531915, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786874, Length=235, Percent_Identity=25.1063829787234, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87082239, Length=242, Percent_Identity=23.5537190082645, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787086, Length=238, Percent_Identity=25.6302521008403, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786873, Length=196, Percent_Identity=28.0612244897959, Blast_Score=61, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 28737; Mature: 28605
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPTTRNPTQGTSHMLDLQGYEASILKGALLTIEIAVLSLLLAMLLGMLGALAKMAPYRW CCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARAIATLYTTIIRGIPDLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYL HHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEC PDYVDISPFVAGVLTIGFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH QMIRHAIPGFGNNWLVLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFF HHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH TSVSTGLLKLLERKFSIHTR HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SPTTRNPTQGTSHMLDLQGYEASILKGALLTIEIAVLSLLLAMLLGMLGALAKMAPYRW CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARAIATLYTTIIRGIPDLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYL HHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEC PDYVDISPFVAGVLTIGFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH QMIRHAIPGFGNNWLVLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFF HHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH TSVSTGLLKLLERKFSIHTR HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-histidine [Periplasm]; H2O; ATP; L-ornithine [Periplasm]; L-arginine [Periplasm]; L-lysine [Periplasm] [C]
Specific reaction: ATP + L-histidine [Periplasm] + H2O = ADP + phosphate + L-histidine [Cytoplasm] ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm] ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] ATP + L-lysine [P
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]