| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
Click here to switch to the map view.
The map label for this gene is 147674028
Identifier: 147674028
GI number: 147674028
Start: 1491842
End: 1492882
Strand: Reverse
Name: 147674028
Synonym: VC0395_A1388
Alternate gene names: NA
Gene position: 1492882-1491842 (Counterclockwise)
Preceding gene: 147673269
Following gene: 147674768
Centisome position: 49.37
GC content: 44.0
Gene sequence:
>1041_bases ATGGCTAACAATTTAAAAACGGATATTGTTTTAAACCTCCAGGGTGATCTTGCCCAGAAAGCGCGGTCGTATAGCAAAGA AATGACAACGCTAGCAACACGTTCAAAAGCTGCATTTAGCATGATTAGTTCATCAGCAATAGCGGCTAGCAGAGGCATTG ACACTTTCGGTAATCGACTGCTTTTTATTACTGGTGCTGCTGCGGTTGGTTTTGAACGTACATTCGTAAAAACTGCTGCT GAATTTGAACGTTACCAAACGATGCTAAATAAGCTTCAAGGCTCACCAGAAGCTGGAGCTAAGGCGATGGCATGGATTGA AGAGTTCACACAAAACACCCCTTACGCTATCGATGAAGTAACACAGTCATTTGTACGTCTAAAAGCCTTTGGTATTGATC CTATGGATGGGACTATGCAAAGTATCGCCGATCAAGCGGCAATGATTGGCGGTACAGCAGAAACAGTTGAAGGTATCGCT ACAGCGTTAGGTCAAGCGTGGACTAAAGGAAAACTTCAATCAGAAGAGGCTCTCCAACTACTAGAGCGAGGTGTTCCTGT TTGGGATTACCTAATTAAATCCAGCAAAGAACTGGGAATGAACAATGGCCGTGGATTTACCAAAGAAGAGCTGGATGATA TGTCATCTAAGGGAAAGCTAGGTAGGGATGCAATCAGGGCTTTAATTAAGCAAATGGGTAAAGAATCCGCTGGTGCAGCC AAAGAGCAGATGAATACATGGAATGGTATGATCTCTAACATGGGCGATCACTGGAAGCTTTTTCAAAAAGATGTGATGGG AAGCGGAGCATTCACAGTTCTAAAAGACCAATTGGGTGAGTTCTTGGGGATGCTTGATGAAATGAAAAAGACTGGCGAAT ACGACGAGTTTGTCGATAAAGTCGGGCGTGATCTTGTTGAGGCCTTTAAATCAGCCGCTGCTGCTGCAAGAGAAATTAAA GAGGTCGGTGAGGAACTATGGCCTGTGATTCGAGAGATTGGCTCAATGGCTTGTAGTGGCATAGTGAATTTGGTCACTTA G
Upstream 100 bases:
>100_bases AACGTAGGCTCACGCTATCCTGTAAGTGATTTCAATCATCAACCAATTCGTAGACTTATCCAACTCATTTTTCGATTAAA AGAGCAGCAGTGAGATCCCC
Downstream 100 bases:
>100_bases TTAGAGGTGATATCATCACCTCATAAGTTAACAGGTGACATTATGACAAAACGTACAAGACGACTATTTAGCGCAGAATT TAAGTTAGAAGCAGCGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRLLFITGAAAVGFERTFVKTAA EFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIA TALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAA KEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIK EVGEELWPVIREIGSMACSGIVNLVT
Sequences:
>Translated_346_residues MANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRLLFITGAAAVGFERTFVKTAA EFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIA TALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAA KEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIK EVGEELWPVIREIGSMACSGIVNLVT >Mature_345_residues ANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRLLFITGAAAVGFERTFVKTAAE FERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIAT ALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAAK EQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIKE VGEELWPVIREIGSMACSGIVNLVT
Specific function: Unknown
COG id: COG3941
COG function: function code R; Mu-like prophage protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein gp42 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013491 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37685; Mature: 37553
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRL CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEE LFITGAAAVGFERTFVKTAAEFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEV EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHH TQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQSEEALQL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAA HHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH KEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDK HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VGRDLVEAFKSAAAAAREIKEVGEELWPVIREIGSMACSGIVNLVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRL CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEE LFITGAAAVGFERTFVKTAAEFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEV EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHH TQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQSEEALQL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAA HHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH KEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDK HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VGRDLVEAFKSAAAAAREIKEVGEELWPVIREIGSMACSGIVNLVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]