| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673405
Identifier: 147673405
GI number: 147673405
Start: 2515329
End: 2516267
Strand: Reverse
Name: 147673405
Synonym: VC0395_A2361
Alternate gene names: NA
Gene position: 2516267-2515329 (Counterclockwise)
Preceding gene: 147675219
Following gene: 147674790
Centisome position: 83.21
GC content: 38.76
Gene sequence:
>939_bases ATGAGTTCTATCTTACCCTTGGAAAAAAGCATAATAATAAGTGTCCCTTCTGATTACACCACTTCAAAGAAAGGGGCTTT TTTTGAAAAATTGTGTGCTCAAATACTGCGCAAGCAATCATACGAGATCACTGGCTGGGAAGTTAGAAGATCTGGGATGG AAGTTGATGTAGAGGCGGTGCATAAGCCGTCCAGCAAAAAAGTATATGTAGAATGTAAGTTTTACAACGACAAGAGCACC ATTGACTCAAAAATTGTTGATTTATGTTTTGCGCAGTCATTTCGAGGAGACTTTGACAAGATTGCTCTATTTTCGACAGT CAAGTTAGGCAAGGATGCACAAACCACTTACGAAAACTTTATAACAAAAGGAATAGACTTTTCCTTTTATGATAGTGATG AAATCTTATCTGCACTGGAAGTAAGCGGTTTAGTTGCAAATATTGATAATCTTAACCTACAAGCCAACATCTCATCCGCA ACTCTCTTGATACATCCTGAAATCGACCCTGTATGGTTATTTCAGGAAAGCTCAAATGGCTCTCCAACAGCTTTGATAGC ATACGTAAGGCAAGGACATTCTGTTAATACCGAGAGAGTGAGAGAAATATTAGATACTGAAGGTAAGCTAGAAGAATTAG ACATTAGGCAGTATCAAGATAAACAGAATTCTAATATCGAAAACTCTTCCTTATCACAGCCAGTAACTAGAGAAGTCGTC AGTGGTATCGTGTTGGCAGATGACATCATGGATCCTAAGCCCTGTCGTCCAAAAGACTTTATAGGTAGAGATGACATACA AAAAGAGATCTGGGATTTCTTAGAGTCGGTAAGGTCAAGTGATAGTGACTGTCGAGTTTTGTCACTAACTGGATCATCGG GAAATGGTAAGTCATCTCTTGTTGCTAATTGTAGTGGCATAGTGAATTTGGTCACTTAG
Upstream 100 bases:
>100_bases ATCGTTTTTTGCGTTTGCTATTGGAGCGATGTTGAGAGGCTGTTCAAATTGAGTTTCATATAGTGTAGATTACTGGAAAA CATAACTGCATGAAATACTT
Downstream 100 bases:
>100_bases TTAGAGGTGATATCATCACCTCATAAGTTAACAGGTGACATTATGACAAAACGTACAAGACGACTATTTAGCGCAGAATT TAAGTTAGAAGCAGCGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MSSILPLEKSIIISVPSDYTTSKKGAFFEKLCAQILRKQSYEITGWEVRRSGMEVDVEAVHKPSSKKVYVECKFYNDKST IDSKIVDLCFAQSFRGDFDKIALFSTVKLGKDAQTTYENFITKGIDFSFYDSDEILSALEVSGLVANIDNLNLQANISSA TLLIHPEIDPVWLFQESSNGSPTALIAYVRQGHSVNTERVREILDTEGKLEELDIRQYQDKQNSNIENSSLSQPVTREVV SGIVLADDIMDPKPCRPKDFIGRDDIQKEIWDFLESVRSSDSDCRVLSLTGSSGNGKSSLVANCSGIVNLVT
Sequences:
>Translated_312_residues MSSILPLEKSIIISVPSDYTTSKKGAFFEKLCAQILRKQSYEITGWEVRRSGMEVDVEAVHKPSSKKVYVECKFYNDKST IDSKIVDLCFAQSFRGDFDKIALFSTVKLGKDAQTTYENFITKGIDFSFYDSDEILSALEVSGLVANIDNLNLQANISSA TLLIHPEIDPVWLFQESSNGSPTALIAYVRQGHSVNTERVREILDTEGKLEELDIRQYQDKQNSNIENSSLSQPVTREVV SGIVLADDIMDPKPCRPKDFIGRDDIQKEIWDFLESVRSSDSDCRVLSLTGSSGNGKSSLVANCSGIVNLVT >Mature_311_residues SSILPLEKSIIISVPSDYTTSKKGAFFEKLCAQILRKQSYEITGWEVRRSGMEVDVEAVHKPSSKKVYVECKFYNDKSTI DSKIVDLCFAQSFRGDFDKIALFSTVKLGKDAQTTYENFITKGIDFSFYDSDEILSALEVSGLVANIDNLNLQANISSAT LLIHPEIDPVWLFQESSNGSPTALIAYVRQGHSVNTERVREILDTEGKLEELDIRQYQDKQNSNIENSSLSQPVTREVVS GIVLADDIMDPKPCRPKDFIGRDDIQKEIWDFLESVRSSDSDCRVLSLTGSSGNGKSSLVANCSGIVNLVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34720; Mature: 34589
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSILPLEKSIIISVPSDYTTSKKGAFFEKLCAQILRKQSYEITGWEVRRSGMEVDVEAV CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEECCCCEEEHHHH HKPSSKKVYVECKFYNDKSTIDSKIVDLCFAQSFRGDFDKIALFSTVKLGKDAQTTYENF CCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH ITKGIDFSFYDSDEILSALEVSGLVANIDNLNLQANISSATLLIHPEIDPVWLFQESSNG HHCCCCEEEECHHHHHHHHHHHHHEEECCCCEEEEECCCEEEEEECCCCEEEEEEECCCC SPTALIAYVRQGHSVNTERVREILDTEGKLEELDIRQYQDKQNSNIENSSLSQPVTREVV CCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH SGIVLADDIMDPKPCRPKDFIGRDDIQKEIWDFLESVRSSDSDCRVLSLTGSSGNGKSSL HCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCE VANCSGIVNLVT EECCCCEEEECC >Mature Secondary Structure SSILPLEKSIIISVPSDYTTSKKGAFFEKLCAQILRKQSYEITGWEVRRSGMEVDVEAV CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEECCCCEEEHHHH HKPSSKKVYVECKFYNDKSTIDSKIVDLCFAQSFRGDFDKIALFSTVKLGKDAQTTYENF CCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH ITKGIDFSFYDSDEILSALEVSGLVANIDNLNLQANISSATLLIHPEIDPVWLFQESSNG HHCCCCEEEECHHHHHHHHHHHHHEEECCCCEEEEECCCEEEEEECCCCEEEEEEECCCC SPTALIAYVRQGHSVNTERVREILDTEGKLEELDIRQYQDKQNSNIENSSLSQPVTREVV CCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH SGIVLADDIMDPKPCRPKDFIGRDDIQKEIWDFLESVRSSDSDCRVLSLTGSSGNGKSSL HCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCE VANCSGIVNLVT EECCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA