Click here to switch to the map view.

The map label for this gene is dctP-1 [H]

Identifier: 147673037

GI number: 147673037

Start: 1482096

End: 1483061

Strand: Reverse

Name: dctP-1 [H]

Synonym: VC0395_A1377

Alternate gene names: 147673037

Gene position: 1483061-1482096 (Counterclockwise)

Preceding gene: 147673587

Following gene: 147675211

Centisome position: 49.04

GC content: 44.62

Gene sequence:

>966_bases
ATGAAAACCATTAATAAGATTACTATCGCAATACTTACTTTGAGTGCTGCTGCTTCTGTCAATGCTGCGACGACTTTAAA
GATGGGGATGCAAGCTTCTGTGGGGTCTGTAGAGTATAACTCGGCAAAAATGCTTGCCGACACATTAGAAGAAATGAGTC
AAGGAGAGATCAAACTCGCTTTGTACCCAAGCGCCCAGCTTGGTGATGATCGTGCCATGCTTCAGCAATTGACGCTGGGA
GATCTCGATATAACTTATGCTGAGTTTGGTCGTATGGGGCTTTGGATACCGCGAGCAGAAGCGGTCATGCTCCCTTATGT
CGCGAAAGATTTTGACCATTTACGCCGCATGTTTGAATCTGACTTTGGTCAAGGTGTTCGTGATGAAATGCTCCAGAAGT
TCAACTGGCGTGCTTTGGACACTTGGTATAACGGTACCCGTGAAACCACTTCAAACCGTCCCCTCAATTCGATTGAAGAT
TTTAAAGGGTTAAAACTTCGAGTCCCGAATGCTAAGCAAAACCTCAACTATGCAAAGCTGTCTGGTGCCTCGCCAACCCC
GATGTCATTCTCTGAAGTTTATTTAGCGCTGCAGACCAATGCCGTAGATGGGCAAGAAAACCCGCTACCAACAATTAAAA
CAATGAAGTTCTATGAAGTGCAAAAGAACTTAGCCATGACACATCATATTGTTAACGATCAAATGGTGATCATTTCGGAA
TCTACTTGGCAGAAGCTTTCTGATACGGATAAAGACATCATTCAGAAAGCCGTGCAGAAAGTGGGAGATGCTCATACACA
GACCGTTAAAACTCAAGAGGCAGAATTGGTCTCCTTCTTCAAGAGTGAAGGTATCAACGTGACTTACCCAGATCTGGAGC
CATTCCGAGAAGCGATGCAACCACTTTACAAGGAGTTTGACAGTAACATCGGTCAGCCGATTGTGTCGAAATTGGCAGCA
ATGTAA

Upstream 100 bases:

>100_bases
CGCAATGATAATTCATAACGAAGATTTTTTTCAAACGAAATAAAAGTTTTTTTTGAAAATGGTGAGACAAGGCGTAACAG
GAAAGAACAAAGGGAAAAAT

Downstream 100 bases:

>100_bases
AGGGTAGGGTTCTCTGTCTCATTAAATTAGCTGGCCAGGACTGGTCAGCTATGGAGCTTAAGATGTTACGTAAGATAATT
AATAATATTGAAGAAATCAT

Product: C4-dicarboxylate-binding periplasmic protein

Products: NA

Alternate protein names: Extracytoplasmic solute receptor protein siaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLG
DLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIED
FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAA
M

Sequences:

>Translated_321_residues
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLG
DLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIED
FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAA
M
>Mature_321_residues
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLG
DLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIED
FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAA
M

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid [H]

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

Organism=Escherichia coli, GI1790004, Length=301, Percent_Identity=29.5681063122924, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 35983; Mature: 35983

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLA
CCCHHHEEEEEEEHHHHHCCCHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCEEEE
LYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFES
ECCCCCCCCHHHHHHHHCCCCCEEHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHHHHH
DFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKL
HHCCCHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCHHHHCCCCEEECCCCHHCCCEEEE
SGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
CCCCCCCCCHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQ
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHH
PLYKEFDSNIGQPIVSKLAAM
HHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLA
CCCHHHEEEEEEEHHHHHCCCHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCEEEE
LYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFES
ECCCCCCCCHHHHHHHHCCCCCEEHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHHHHH
DFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKL
HHCCCHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCHHHHCCCCEEECCCCHHCCCEEEE
SGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
CCCCCCCCCHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQ
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHH
PLYKEFDSNIGQPIVSKLAAM
HHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA