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The map label for this gene is bfrD [H]

Identifier: 146343121

GI number: 146343121

Start: 6569114

End: 6571507

Strand: Reverse

Name: bfrD [H]

Synonym: BRADO6318

Alternate gene names: 146343121

Gene position: 6571507-6569114 (Counterclockwise)

Preceding gene: 146343122

Following gene: 146343120

Centisome position: 88.13

GC content: 64.62

Gene sequence:

>2394_bases
ATGGGTCGAGCTGTCTTTCCAGCAAGCTTGCGCGGGCGTGTCGCGCAGTCATCGGATGCGGGGTCCGAGATTTCCGGGGC
GACGGTGTCTGCCGTCGCGGGCCTGATCGCGGTGGCGTCGTTCTCGGGCGCTGAAGCTCAGCAAGCGCCTCTGCCCTCCG
TCACCGTCGAAGCGCCGGCCGCGCGAGCCAAGCCATCGGCCTCGCGGCCGTCGGCCGATCAGGTGCGTGCCCGCAGCGCC
CTGCGGCGCGCCGCGCGCCAGCCACAACAGCAGAAGCCGCCGGCCGGCCCGCAGACGCCGCCCGACGCCAACCCCTATGC
CGACGCCGCCGCGCCCTACAAGGTCGACCGCGTCGCGTCCGGCAAGTTCACCGAGAAGCTGGTCAACACGCCGAAGACGA
TCACCGTGATGAGCAAGGAGGTGATGGAGGACAAGCACATCACCACGCTGAAAGAGGTCGGCCGCTCCACGGCGGGCGTC
ACGCTCGGCTCCGGCGAGGGCGGCAACGCGTTCGGCGACCGCTTCTTCATCCGCGGCTTCGATGCGCGCAACGACATCTT
CATCGACGGCATCCGCGATCCCGCCGTGTCTGTGCGCGAGAACTTCTTCACCGAGCAGGTCGAGATCCTGCGCGGTCCGG
CCTCGGCCTATGCCGGCCGCGGCACCGCCGGGGGCGCCATCAACATCATCACCAAGCAGGCCGGCGACCGCAATTTCTAC
AACGCGGAATCGACCATCGGCACGGACCAGACCAAGCGCGTCACGCTCGACGTCAACCAGAAGATCTCGCCGACCTTCTC
CGTGCGCACCGGCGGCCTGTTCCAGGACGCCAATGTCGCGGGCCGAGACCACGTCACCGACGACCGCTGGGGCGGCTTCA
TCTCGACGAAGTGGACGCCGAACGATTCGCTGAAGGTGACGACCAACTACGTCCACACCGATCTGTCCGGCTATCCCGAT
TTCGGCGTGCCGTTCTACAAGCAGGGCAACATCCCGGTCACCTCGGCCGGCATCCCGCGCAACACCTGGTACGGCTTTCT
CAACCGCGACTTCCAGGCGGCGCGGCAGGATTTCGGCACGCTGGTCGGCGAGCTCAAGCTCAGCGACTCCGTCACCTTCT
CAAGCAAGCTGCGCGGCGAGCATTCCGAGCTGAACTACATCGGCACTCTGCCGAACACCACCGCGGCGCAGACGGCAAGC
CCAGATCCGACCAAATGGACATTCACGGCAAGCCCGCAGAGCCGCTATCAGCTCGTCGACAACTGGAGCAACCAGAACGA
TCTGACGTTCAAATACGACACCGGGCCGGTTAAGCATACGACCGTGGTGGGCACGGAGTTCTCGAAGGAGAATATCTCCA
TCGACCGCTACGCCGGCCTGACATCGGAGGCCTTCGGCGCGCAGGGCACGAGCAGCGGCGCGCTGACGCTGCAGAACATG
TACAGCCCGGGCTACACCAACCTGCCGTTCACGACCGTGGGCTATCTGACCGGAAACCCGACGCGCTACGACGTCGACAG
CAAGAGTGCCTATGTCATCGACACCGCGAACTGGCGTGACACGCTGATCCTCTCCACCGGCCTGCGCTATGACGGCTATG
CCATGCGCTCGTCGAATAACACGGCCTCGGCGACCGTCGATTCCGACCTGATCAACTACAATGTCGGTCTCGTCTACAAG
CCGATGCCGATCGGCAGCCTCTACGCCGCCTATGCGACCTCGGCCAACCCGTTCGGCTCCGAGCTCGACGGCACCGCGAC
CGACTACGGCGGTATTCCGCCGAACAGCACCATCATTCTCGGGCCGGAGCGCAACAAGGGTGCCGAGGTCGGCACCAAAT
GGGAGCTGTTCGACCGCCATCTGCTGCTGACCGGCGCGCTGTTCCAGACCACCAAGGACAATGCCCGCGAGACCGTCAAC
GGCCTGCTCACCTCCGGCGCCGCCTATCGCATCCAGGGCTTCGATCTCGAAGCCGAAGGCAAGATCACCGATCGCTGGAG
CGTGTTCGGCGGGCTGGTGCTGATGCAGTCCAAGGTCACCGAGAGCGGCGTCGCCTCCAATGTCGGCCTGCAACTCGCCA
ATATCGCGCACCAGTCGCTGAGCGTGCTGTCCAAATACAAGTTCGACGACGGCTGGGAGATCGGCGGCCAGGCGGTGTAC
CGCTCGAAAGTGTACGGAGGCACCTTCGCGGCCAATACCGGCAACGAGCTGCCGAGCTATTGGCGGTTCGATGCCTTCAT
CGAGAAGCAGTTCGACAAGAACTGGAGCGCGAAGCTCTACGCCCAGAACCTCACCAACCAGCTTTATTATGACACCTTCT
ACCGCAGCAACGTGCCATTCACCGCGGTCGCTCCGGGGCGCGCCTTCTATGTGATCACCACAGCGAAGTTCTGA

Upstream 100 bases:

>100_bases
AATTCAAGGACTTTTTGAGAGCCATTCGCGATTGGAACAGTCCAGTTGTCGATGTGACGAACAGAATTCAGTCCTTGAAT
AGACATTGGGGTGGTCGAGC

Downstream 100 bases:

>100_bases
GCGGGTCGATCCCAGACAGGCGACAGTATCGCCGAATTCCCGCCGCAGCTCACGGCTGCGGCGGGTGCGAGAACGAGACG
ATACGCCGCAGCCTGGGACA

Product: putative TonB-dependent receptor protein

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 797; Mature: 796

Protein sequence:

>797_residues
MGRAVFPASLRGRVAQSSDAGSEISGATVSAVAGLIAVASFSGAEAQQAPLPSVTVEAPAARAKPSASRPSADQVRARSA
LRRAARQPQQQKPPAGPQTPPDANPYADAAAPYKVDRVASGKFTEKLVNTPKTITVMSKEVMEDKHITTLKEVGRSTAGV
TLGSGEGGNAFGDRFFIRGFDARNDIFIDGIRDPAVSVRENFFTEQVEILRGPASAYAGRGTAGGAINIITKQAGDRNFY
NAESTIGTDQTKRVTLDVNQKISPTFSVRTGGLFQDANVAGRDHVTDDRWGGFISTKWTPNDSLKVTTNYVHTDLSGYPD
FGVPFYKQGNIPVTSAGIPRNTWYGFLNRDFQAARQDFGTLVGELKLSDSVTFSSKLRGEHSELNYIGTLPNTTAAQTAS
PDPTKWTFTASPQSRYQLVDNWSNQNDLTFKYDTGPVKHTTVVGTEFSKENISIDRYAGLTSEAFGAQGTSSGALTLQNM
YSPGYTNLPFTTVGYLTGNPTRYDVDSKSAYVIDTANWRDTLILSTGLRYDGYAMRSSNNTASATVDSDLINYNVGLVYK
PMPIGSLYAAYATSANPFGSELDGTATDYGGIPPNSTIILGPERNKGAEVGTKWELFDRHLLLTGALFQTTKDNARETVN
GLLTSGAAYRIQGFDLEAEGKITDRWSVFGGLVLMQSKVTESGVASNVGLQLANIAHQSLSVLSKYKFDDGWEIGGQAVY
RSKVYGGTFAANTGNELPSYWRFDAFIEKQFDKNWSAKLYAQNLTNQLYYDTFYRSNVPFTAVAPGRAFYVITTAKF

Sequences:

>Translated_797_residues
MGRAVFPASLRGRVAQSSDAGSEISGATVSAVAGLIAVASFSGAEAQQAPLPSVTVEAPAARAKPSASRPSADQVRARSA
LRRAARQPQQQKPPAGPQTPPDANPYADAAAPYKVDRVASGKFTEKLVNTPKTITVMSKEVMEDKHITTLKEVGRSTAGV
TLGSGEGGNAFGDRFFIRGFDARNDIFIDGIRDPAVSVRENFFTEQVEILRGPASAYAGRGTAGGAINIITKQAGDRNFY
NAESTIGTDQTKRVTLDVNQKISPTFSVRTGGLFQDANVAGRDHVTDDRWGGFISTKWTPNDSLKVTTNYVHTDLSGYPD
FGVPFYKQGNIPVTSAGIPRNTWYGFLNRDFQAARQDFGTLVGELKLSDSVTFSSKLRGEHSELNYIGTLPNTTAAQTAS
PDPTKWTFTASPQSRYQLVDNWSNQNDLTFKYDTGPVKHTTVVGTEFSKENISIDRYAGLTSEAFGAQGTSSGALTLQNM
YSPGYTNLPFTTVGYLTGNPTRYDVDSKSAYVIDTANWRDTLILSTGLRYDGYAMRSSNNTASATVDSDLINYNVGLVYK
PMPIGSLYAAYATSANPFGSELDGTATDYGGIPPNSTIILGPERNKGAEVGTKWELFDRHLLLTGALFQTTKDNARETVN
GLLTSGAAYRIQGFDLEAEGKITDRWSVFGGLVLMQSKVTESGVASNVGLQLANIAHQSLSVLSKYKFDDGWEIGGQAVY
RSKVYGGTFAANTGNELPSYWRFDAFIEKQFDKNWSAKLYAQNLTNQLYYDTFYRSNVPFTAVAPGRAFYVITTAKF
>Mature_796_residues
GRAVFPASLRGRVAQSSDAGSEISGATVSAVAGLIAVASFSGAEAQQAPLPSVTVEAPAARAKPSASRPSADQVRARSAL
RRAARQPQQQKPPAGPQTPPDANPYADAAAPYKVDRVASGKFTEKLVNTPKTITVMSKEVMEDKHITTLKEVGRSTAGVT
LGSGEGGNAFGDRFFIRGFDARNDIFIDGIRDPAVSVRENFFTEQVEILRGPASAYAGRGTAGGAINIITKQAGDRNFYN
AESTIGTDQTKRVTLDVNQKISPTFSVRTGGLFQDANVAGRDHVTDDRWGGFISTKWTPNDSLKVTTNYVHTDLSGYPDF
GVPFYKQGNIPVTSAGIPRNTWYGFLNRDFQAARQDFGTLVGELKLSDSVTFSSKLRGEHSELNYIGTLPNTTAAQTASP
DPTKWTFTASPQSRYQLVDNWSNQNDLTFKYDTGPVKHTTVVGTEFSKENISIDRYAGLTSEAFGAQGTSSGALTLQNMY
SPGYTNLPFTTVGYLTGNPTRYDVDSKSAYVIDTANWRDTLILSTGLRYDGYAMRSSNNTASATVDSDLINYNVGLVYKP
MPIGSLYAAYATSANPFGSELDGTATDYGGIPPNSTIILGPERNKGAEVGTKWELFDRHLLLTGALFQTTKDNARETVNG
LLTSGAAYRIQGFDLEAEGKITDRWSVFGGLVLMQSKVTESGVASNVGLQLANIAHQSLSVLSKYKFDDGWEIGGQAVYR
SKVYGGTFAANTGNELPSYWRFDAFIEKQFDKNWSAKLYAQNLTNQLYYDTFYRSNVPFTAVAPGRAFYVITTAKF

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=754, Percent_Identity=27.4535809018568, Blast_Score=228, Evalue=2e-60,
Organism=Escherichia coli, GI1786344, Length=677, Percent_Identity=23.0428360413589, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1787344, Length=764, Percent_Identity=22.5130890052356, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 86244; Mature: 86113

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRAVFPASLRGRVAQSSDAGSEISGATVSAVAGLIAVASFSGAEAQQAPLPSVTVEAPA
CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEECCC
ARAKPSASRPSADQVRARSALRRAARQPQQQKPPAGPQTPPDANPYADAAAPYKVDRVAS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
GKFTEKLVNTPKTITVMSKEVMEDKHITTLKEVGRSTAGVTLGSGEGGNAFGDRFFIRGF
CHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEE
DARNDIFIDGIRDPAVSVRENFFTEQVEILRGPASAYAGRGTAGGAINIITKQAGDRNFY
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEECCCCCCCC
NAESTIGTDQTKRVTLDVNQKISPTFSVRTGGLFQDANVAGRDHVTDDRWGGFISTKWTP
CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCEEEEEECC
NDSLKVTTNYVHTDLSGYPDFGVPFYKQGNIPVTSAGIPRNTWYGFLNRDFQAARQDFGT
CCCEEEEEEEEEECCCCCCCCCCCEEECCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH
LVGELKLSDSVTFSSKLRGEHSELNYIGTLPNTTAAQTASPDPTKWTFTASPQSRYQLVD
HHEEEEECCCEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
NWSNQNDLTFKYDTGPVKHTTVVGTEFSKENISIDRYAGLTSEAFGAQGTSSGALTLQNM
CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHCCCCHHHCCCCCCCCCCEEEEEC
YSPGYTNLPFTTVGYLTGNPTRYDVDSKSAYVIDTANWRDTLILSTGLRYDGYAMRSSNN
CCCCCCCCCEEEEEEEECCCEEEECCCCCEEEEECCCCCEEEEEECCCCCCCEEEECCCC
TASATVDSDLINYNVGLVYKPMPIGSLYAAYATSANPFGSELDGTATDYGGIPPNSTIIL
CCEEEECCCCEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
GPERNKGAEVGTKWELFDRHLLLTGALFQTTKDNARETVNGLLTSGAAYRIQGFDLEAEG
CCCCCCCCCCCCCHHHHHCEEEEEHHHHHCCCHHHHHHHHHHHCCCCEEEEEECEECCCC
KITDRWSVFGGLVLMQSKVTESGVASNVGLQLANIAHQSLSVLSKYKFDDGWEIGGQAVY
CCCCHHHHHHCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
RSKVYGGTFAANTGNELPSYWRFDAFIEKQFDKNWSAKLYAQNLTNQLYYDTFYRSNVPF
EEEECCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHCCHHEEHHHHCCCCCE
TAVAPGRAFYVITTAKF
EEECCCCEEEEEEECCC
>Mature Secondary Structure 
GRAVFPASLRGRVAQSSDAGSEISGATVSAVAGLIAVASFSGAEAQQAPLPSVTVEAPA
CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEECCC
ARAKPSASRPSADQVRARSALRRAARQPQQQKPPAGPQTPPDANPYADAAAPYKVDRVAS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
GKFTEKLVNTPKTITVMSKEVMEDKHITTLKEVGRSTAGVTLGSGEGGNAFGDRFFIRGF
CHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEE
DARNDIFIDGIRDPAVSVRENFFTEQVEILRGPASAYAGRGTAGGAINIITKQAGDRNFY
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEECCCCCCCC
NAESTIGTDQTKRVTLDVNQKISPTFSVRTGGLFQDANVAGRDHVTDDRWGGFISTKWTP
CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCEEEEEECC
NDSLKVTTNYVHTDLSGYPDFGVPFYKQGNIPVTSAGIPRNTWYGFLNRDFQAARQDFGT
CCCEEEEEEEEEECCCCCCCCCCCEEECCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH
LVGELKLSDSVTFSSKLRGEHSELNYIGTLPNTTAAQTASPDPTKWTFTASPQSRYQLVD
HHEEEEECCCEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
NWSNQNDLTFKYDTGPVKHTTVVGTEFSKENISIDRYAGLTSEAFGAQGTSSGALTLQNM
CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHCCCCHHHCCCCCCCCCCEEEEEC
YSPGYTNLPFTTVGYLTGNPTRYDVDSKSAYVIDTANWRDTLILSTGLRYDGYAMRSSNN
CCCCCCCCCEEEEEEEECCCEEEECCCCCEEEEECCCCCEEEEEECCCCCCCEEEECCCC
TASATVDSDLINYNVGLVYKPMPIGSLYAAYATSANPFGSELDGTATDYGGIPPNSTIIL
CCEEEECCCCEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
GPERNKGAEVGTKWELFDRHLLLTGALFQTTKDNARETVNGLLTSGAAYRIQGFDLEAEG
CCCCCCCCCCCCCHHHHHCEEEEEHHHHHCCCHHHHHHHHHHHCCCCEEEEEECEECCCC
KITDRWSVFGGLVLMQSKVTESGVASNVGLQLANIAHQSLSVLSKYKFDDGWEIGGQAVY
CCCCHHHHHHCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
RSKVYGGTFAANTGNELPSYWRFDAFIEKQFDKNWSAKLYAQNLTNQLYYDTFYRSNVPF
EEEECCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHCCHHEEHHHHCCCCCE
TAVAPGRAFYVITTAKF
EEECCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]