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The map label for this gene is ybiX [C]

Identifier: 146343119

GI number: 146343119

Start: 6565431

End: 6566120

Strand: Reverse

Name: ybiX [C]

Synonym: BRADO6316

Alternate gene names: 146343119

Gene position: 6566120-6565431 (Counterclockwise)

Preceding gene: 146343120

Following gene: 146343118

Centisome position: 88.06

GC content: 65.07

Gene sequence:

>690_bases
ATGCTGATCTGTGTCCCCGGTATCCTGAGCAAAGACGATGTGGCGGAGTTCCGCCACATCATGGCCGAAAGCGATTGGGA
GGACGGCCGCTCGACGGCCGGCGCCCAGTCGGCCATGGTCAAGCGCAACGAGCAGCTGCCGCCCGACAGCGAGGTCGCGC
GCAGGCTCGGCCACCGCATCATCTCGGCGATGACCGCCAATCCGCGCTTCCTCGCCGCCGCGATTCCGCAGCAGATCTTT
CCGCCGCTGTTCAACCGCTACGCCGCCGACGCCGGCCATCAATTCGGCATTCACGTCGACAACGCGGTGCGCGGCGACAA
GCTGACCGGGCTGCGCATCCGAACAGATCTCTCCGTCACGCTGTTTCTGTCCGAGCCCGACGAATATGACGGCGGCGAGC
TCGTGATCGAGGACCTCTACGGATCGCACGAGGTCAAGCTGCCCGCCGGCGATCTCGTGCTGTATCCGGCCTCGAGCCTG
CACATGGTGACGCCGGTGACGCGCGGCGTCCGGGTCGCCTCGTTCTTCTGGTTGCAGAGCATGATCCGTGATCCGCTCGC
GCGCAGCATGATCTTCGATCTCGACACGACGATCCAGGGATTGTCGCAGCGCATGGGCCGGGACGATCCGGAGATGGTGC
GGTTGACCGGCCTCTACCACAATCTGATCCGCTACTGGGCGGAGACCTGA

Upstream 100 bases:

>100_bases
GTCGGCCCGGGCAGAAGCGCGTCGATCGTCCTGTCGGGCCGCTTCTGATGGCGCGATCCGACGGGTCACAACCGGTGGCA
CCTATCGAGTCGACGCGTTC

Downstream 100 bases:

>100_bases
GGGGCAGGTCCGATCCGGACGCGGCGGGCGCCCTTGCGACCGCTGACGGCGGCAGTGTCGCACCAGAGCCGTGCGTGACA
TCATCACCTCGGATGTCGAA

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLICVPGILSKDDVAEFRHIMAESDWEDGRSTAGAQSAMVKRNEQLPPDSEVARRLGHRIISAMTANPRFLAAAIPQQIF
PPLFNRYAADAGHQFGIHVDNAVRGDKLTGLRIRTDLSVTLFLSEPDEYDGGELVIEDLYGSHEVKLPAGDLVLYPASSL
HMVTPVTRGVRVASFFWLQSMIRDPLARSMIFDLDTTIQGLSQRMGRDDPEMVRLTGLYHNLIRYWAET

Sequences:

>Translated_229_residues
MLICVPGILSKDDVAEFRHIMAESDWEDGRSTAGAQSAMVKRNEQLPPDSEVARRLGHRIISAMTANPRFLAAAIPQQIF
PPLFNRYAADAGHQFGIHVDNAVRGDKLTGLRIRTDLSVTLFLSEPDEYDGGELVIEDLYGSHEVKLPAGDLVLYPASSL
HMVTPVTRGVRVASFFWLQSMIRDPLARSMIFDLDTTIQGLSQRMGRDDPEMVRLTGLYHNLIRYWAET
>Mature_229_residues
MLICVPGILSKDDVAEFRHIMAESDWEDGRSTAGAQSAMVKRNEQLPPDSEVARRLGHRIISAMTANPRFLAAAIPQQIF
PPLFNRYAADAGHQFGIHVDNAVRGDKLTGLRIRTDLSVTLFLSEPDEYDGGELVIEDLYGSHEVKLPAGDLVLYPASSL
HMVTPVTRGVRVASFFWLQSMIRDPLARSMIFDLDTTIQGLSQRMGRDDPEMVRLTGLYHNLIRYWAET

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain [H]

Homologues:

Organism=Escherichia coli, GI87081784, Length=228, Percent_Identity=53.5087719298246, Blast_Score=247, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005123
- InterPro:   IPR006620 [H]

Pfam domain/function: PF03171 2OG-FeII_Oxy [H]

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25624; Mature: 25624

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLICVPGILSKDDVAEFRHIMAESDWEDGRSTAGAQSAMVKRNEQLPPDSEVARRLGHRI
CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
ISAMTANPRFLAAAIPQQIFPPLFNRYAADAGHQFGIHVDNAVRGDKLTGLRIRTDLSVT
HHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEECEEECCCCCCCCCCCEEEEECCEEE
LFLSEPDEYDGGELVIEDLYGSHEVKLPAGDLVLYPASSLHMVTPVTRGVRVASFFWLQS
EEEECCCCCCCCEEEEEECCCCCEEECCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHH
MIRDPLARSMIFDLDTTIQGLSQRMGRDDPEMVRLTGLYHNLIRYWAET
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLICVPGILSKDDVAEFRHIMAESDWEDGRSTAGAQSAMVKRNEQLPPDSEVARRLGHRI
CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
ISAMTANPRFLAAAIPQQIFPPLFNRYAADAGHQFGIHVDNAVRGDKLTGLRIRTDLSVT
HHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCEECEEECCCCCCCCCCCEEEEECCEEE
LFLSEPDEYDGGELVIEDLYGSHEVKLPAGDLVLYPASSLHMVTPVTRGVRVASFFWLQS
EEEECCCCCCCCEEEEEECCCCCEEECCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHH
MIRDPLARSMIFDLDTTIQGLSQRMGRDDPEMVRLTGLYHNLIRYWAET
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA