| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is dcp [H]
Identifier: 146343066
GI number: 146343066
Start: 6503379
End: 6505460
Strand: Reverse
Name: dcp [H]
Synonym: BRADO6258
Alternate gene names: 146343066
Gene position: 6505460-6503379 (Counterclockwise)
Preceding gene: 146343073
Following gene: 146343065
Centisome position: 87.24
GC content: 67.05
Gene sequence:
>2082_bases ATGTCCGACACGACCGCCTCGATCGACGCCGCAAGCAATCCGCTGCTCGTGGCCTGGGACACCCCGCACCAGACACCGCC CTTCGACGCGATCAGGCCCGAGCACTTCCTGCCGGCCTTCGAGCGCGCCTTCGCCGACCACACCGCTGAAATCACCGCGA TCACCCACGATCCGGCGGAGCCCGACTTCGCCAACACCATCACGGCGCTGGAGCGCTCGGGCAAGCTGCTGTCGAAGGTC GCCGCCGTCTTCTATGATCTTGTCTCGGCGCACTCCAACCCGGCGATTCTGGAGATCGACAAGGAAGTGTCGCTGCGGAT GGCGCGGCACTGGAACCCGATCATGATGAACGCCGTGCTGTTTGGTCGCATCGCGCTGCTCTACGACAACCGCAAGACGC TGACGCTCACCGGCGAGGAGCAGCGGCTGCTGGAGCGCACCTACACCCGCTTCCGCCGCGCCGGCGCAGGCCTCAAGGAC GAGGCCAAGGCGCGCATGGCCGAGATCAACGAGCAGCTCGCCCAGCTCGGCACCACCTTCAGCCACCACGTGCTCGGCGA CGAGCAGGACTGGTTCCTGGAGCTCGGCGAGGATGACCGCGCCGGCCTCTCCGACAGCTTCGTCGCCGCCGCCAAGGCTG CGGCGGAGGAGCGCGGCATGCCCGGCAAGGCGATCGTGACCCTGTCGCGCTCCTCGGTCGAGCCGTTCCTGCAGAGCTCC TCCCGCCGCGACCTGCGCGAGAAGGTGTTCAAGGCCTTCACCGCGCGCGGCGACAACGGGAATACCAACGACAACAACGC GGTCATCGGCCAGATCCTGGCGCTGCGCGAGGAGTCCGCCAAGATCATGGGCTTCCCGAACTTCGCGGTCTATCGCCTCG AGGATTCCATGGCGAAGACCCCGGAGGCGGTGCGCGGCCTGTTGGAGCGGGTCTGGAAGCCAGCGCGCGCCAAGGCGCTG GCCGATCGCGACCAGCTGCAACAGCTGATCACGGAAGAGGGCGGCAACTTCAAGCTCGAGGCCTGGGACTGGCGCTATTA CGCCGAGAAGCTGCGCCAGGCGAAGGCGAACTTCGACGACGCCGCGATCAAGCCGTATCTCGCGCTCGACAACATGGTCG CGGCGGCCTTCGACTGCGCGACGCGGCTGTTCGGGATCACCTTCGCCGAGCGCAAGGACATCCCGGTCTGGCACCCGGAC GTCCGGGTGTGGGAGATCAAGGAAGCCGACGGCCGCCACAAGGCGCTGTTCTATGGCGACTACTTCGCCCGGCCGTCGAA GCGCTCCGGCGCCTGGATGACCTCGCTGCGCGACCAGCAGAAGCTCGACGGCGACACCGCGCCGCTGATCATCAACGTCT GCAATTTCGCCAAGGGCGCCGACGGCCAGCCCTCGCTGCTGTCGCCGGACGATGCCCGCACGCTGTTCCACGAGTTCGGC CACGGCCTGCATGGCATCCTCTCCAACGTGACCTATCCGTCGCTGTCGGGCACGTCTGTCTTCACCGACTTCGTCGAGCT GCCGTCGCAGCTCTACGAGCACTGGCAGGAGCGCCCCGAGGTGCTGCAGACCTTCGCGAAGCACTACCAGACCGGCGAGC CGCTGCCGCAGGACCTGCTGGAGCGCTTCCTCGCCGCGCGCCGTTTCAACCAGGGTTTTGCCACCGTCGAGTTCGTCTCG TCGGCGCTGATCGATCTGGAGTTCCACACCCAGCCGGCCGCGGCATCGAAGGATGTGCGCGCGTTCGAGACGGCCGAGAT GGAGAAGATCGGCATGCCCAAGGAGATCGCGCTGCGCCACCGGCCGACCCAATTCGGCCATATCTTCTCGGGAGACCACT ACGCGGCGGGCTATTACAGCTACATGTGGTCGGAGGTGATGGATGCGGATGCCTTCGGGGCCTTCGAGGAAGCCGGCAAC ATCTTCGATCCCGCCGTCGCCAAGCGGCTTCACGACAACGTCTACTCCTCTGGAGGCTCGCTCGATCCCGAGGCGGCTTA CGTCGCGTTCCGCGGCCGCGAGCCCGAGCCCGACGCGCTGCTCCGCCGGCGCGGCCTGCTCGACATTCCCGCAGCGGCTT GA
Upstream 100 bases:
>100_bases AATCTCTCCGAAATGGTCCCGGCCTTCAAGGGGAAATGACCCAAAAAGGACCGGCTCCGTGGTAAGAGGGGCGCCTGTTT GATCCGGAGAGCAAGAGCCG
Downstream 100 bases:
>100_bases GGTGAGGGCGATGATCCGTGCCGTTATGGCGGCGCTGCTGCTCATGCTGGGGGCGGGCGCGGCGAGCGCTCATCCCCATG TCTGGGTCACCGCGACCAGC
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 693; Mature: 692
Protein sequence:
>693_residues MSDTTASIDAASNPLLVAWDTPHQTPPFDAIRPEHFLPAFERAFADHTAEITAITHDPAEPDFANTITALERSGKLLSKV AAVFYDLVSAHSNPAILEIDKEVSLRMARHWNPIMMNAVLFGRIALLYDNRKTLTLTGEEQRLLERTYTRFRRAGAGLKD EAKARMAEINEQLAQLGTTFSHHVLGDEQDWFLELGEDDRAGLSDSFVAAAKAAAEERGMPGKAIVTLSRSSVEPFLQSS SRRDLREKVFKAFTARGDNGNTNDNNAVIGQILALREESAKIMGFPNFAVYRLEDSMAKTPEAVRGLLERVWKPARAKAL ADRDQLQQLITEEGGNFKLEAWDWRYYAEKLRQAKANFDDAAIKPYLALDNMVAAAFDCATRLFGITFAERKDIPVWHPD VRVWEIKEADGRHKALFYGDYFARPSKRSGAWMTSLRDQQKLDGDTAPLIINVCNFAKGADGQPSLLSPDDARTLFHEFG HGLHGILSNVTYPSLSGTSVFTDFVELPSQLYEHWQERPEVLQTFAKHYQTGEPLPQDLLERFLAARRFNQGFATVEFVS SALIDLEFHTQPAAASKDVRAFETAEMEKIGMPKEIALRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEEAGN IFDPAVAKRLHDNVYSSGGSLDPEAAYVAFRGREPEPDALLRRRGLLDIPAAA
Sequences:
>Translated_693_residues MSDTTASIDAASNPLLVAWDTPHQTPPFDAIRPEHFLPAFERAFADHTAEITAITHDPAEPDFANTITALERSGKLLSKV AAVFYDLVSAHSNPAILEIDKEVSLRMARHWNPIMMNAVLFGRIALLYDNRKTLTLTGEEQRLLERTYTRFRRAGAGLKD EAKARMAEINEQLAQLGTTFSHHVLGDEQDWFLELGEDDRAGLSDSFVAAAKAAAEERGMPGKAIVTLSRSSVEPFLQSS SRRDLREKVFKAFTARGDNGNTNDNNAVIGQILALREESAKIMGFPNFAVYRLEDSMAKTPEAVRGLLERVWKPARAKAL ADRDQLQQLITEEGGNFKLEAWDWRYYAEKLRQAKANFDDAAIKPYLALDNMVAAAFDCATRLFGITFAERKDIPVWHPD VRVWEIKEADGRHKALFYGDYFARPSKRSGAWMTSLRDQQKLDGDTAPLIINVCNFAKGADGQPSLLSPDDARTLFHEFG HGLHGILSNVTYPSLSGTSVFTDFVELPSQLYEHWQERPEVLQTFAKHYQTGEPLPQDLLERFLAARRFNQGFATVEFVS SALIDLEFHTQPAAASKDVRAFETAEMEKIGMPKEIALRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEEAGN IFDPAVAKRLHDNVYSSGGSLDPEAAYVAFRGREPEPDALLRRRGLLDIPAAA >Mature_692_residues SDTTASIDAASNPLLVAWDTPHQTPPFDAIRPEHFLPAFERAFADHTAEITAITHDPAEPDFANTITALERSGKLLSKVA AVFYDLVSAHSNPAILEIDKEVSLRMARHWNPIMMNAVLFGRIALLYDNRKTLTLTGEEQRLLERTYTRFRRAGAGLKDE AKARMAEINEQLAQLGTTFSHHVLGDEQDWFLELGEDDRAGLSDSFVAAAKAAAEERGMPGKAIVTLSRSSVEPFLQSSS RRDLREKVFKAFTARGDNGNTNDNNAVIGQILALREESAKIMGFPNFAVYRLEDSMAKTPEAVRGLLERVWKPARAKALA DRDQLQQLITEEGGNFKLEAWDWRYYAEKLRQAKANFDDAAIKPYLALDNMVAAAFDCATRLFGITFAERKDIPVWHPDV RVWEIKEADGRHKALFYGDYFARPSKRSGAWMTSLRDQQKLDGDTAPLIINVCNFAKGADGQPSLLSPDDARTLFHEFGH GLHGILSNVTYPSLSGTSVFTDFVELPSQLYEHWQERPEVLQTFAKHYQTGEPLPQDLLERFLAARRFNQGFATVEFVSS ALIDLEFHTQPAAASKDVRAFETAEMEKIGMPKEIALRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEEAGNI FDPAVAKRLHDNVYSSGGSLDPEAAYVAFRGREPEPDALLRRRGLLDIPAAA
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=607, Percent_Identity=29.6540362438221, Blast_Score=241, Evalue=2e-63, Organism=Homo sapiens, GI14149738, Length=597, Percent_Identity=27.9731993299832, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI156105687, Length=643, Percent_Identity=24.7278382581649, Blast_Score=159, Evalue=6e-39, Organism=Escherichia coli, GI1787819, Length=679, Percent_Identity=39.3225331369661, Blast_Score=478, Evalue=1e-136, Organism=Escherichia coli, GI1789913, Length=686, Percent_Identity=34.9854227405248, Blast_Score=379, Evalue=1e-106, Organism=Caenorhabditis elegans, GI32565901, Length=559, Percent_Identity=22.5402504472272, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71999758, Length=480, Percent_Identity=21.6666666666667, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6319793, Length=618, Percent_Identity=27.0226537216829, Blast_Score=191, Evalue=3e-49, Organism=Saccharomyces cerevisiae, GI6322715, Length=634, Percent_Identity=22.2397476340694, Blast_Score=131, Evalue=4e-31, Organism=Drosophila melanogaster, GI21356111, Length=492, Percent_Identity=27.4390243902439, Blast_Score=183, Evalue=3e-46, Organism=Drosophila melanogaster, GI20129717, Length=555, Percent_Identity=24.8648648648649, Blast_Score=151, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 77470; Mature: 77339
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTTASIDAASNPLLVAWDTPHQTPPFDAIRPEHFLPAFERAFADHTAEITAITHDPAE CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC PDFANTITALERSGKLLSKVAAVFYDLVSAHSNPAILEIDKEVSLRMARHWNPIMMNAVL CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCHHHHHHHH FGRIALLYDNRKTLTLTGEEQRLLERTYTRFRRAGAGLKDEAKARMAEINEQLAQLGTTF HHHEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH SHHVLGDEQDWFLELGEDDRAGLSDSFVAAAKAAAEERGMPGKAIVTLSRSSVEPFLQSS HHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHCC SRRDLREKVFKAFTARGDNGNTNDNNAVIGQILALREESAKIMGFPNFAVYRLEDSMAKT HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCEEEEEECHHHHCC PEAVRGLLERVWKPARAKALADRDQLQQLITEEGGNFKLEAWDWRYYAEKLRQAKANFDD HHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCC AAIKPYLALDNMVAAAFDCATRLFGITFAERKDIPVWHPDVRVWEIKEADGRHKALFYGD HHCCHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEH YFARPSKRSGAWMTSLRDQQKLDGDTAPLIINVCNFAKGADGQPSLLSPDDARTLFHEFG HHCCCCCCCCCHHHHHHHHHHCCCCCCCHHEEEHHCCCCCCCCCCCCCCHHHHHHHHHHC HGLHGILSNVTYPSLSGTSVFTDFVELPSQLYEHWQERPEVLQTFAKHYQTGEPLPQDLL CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH ERFLAARRFNQGFATVEFVSSALIDLEFHTQPAAASKDVRAFETAEMEKIGMPKEIALRH HHHHHHHHHCCCCHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHC RPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEEAGNIFDPAVAKRLHDNVYSSGGS CCCCCCCEECCCCCCHHHHHHHHHHHHCHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCC LDPEAAYVAFRGREPEPDALLRRRGLLDIPAAA CCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC >Mature Secondary Structure SDTTASIDAASNPLLVAWDTPHQTPPFDAIRPEHFLPAFERAFADHTAEITAITHDPAE CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC PDFANTITALERSGKLLSKVAAVFYDLVSAHSNPAILEIDKEVSLRMARHWNPIMMNAVL CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCHHHHHHHH FGRIALLYDNRKTLTLTGEEQRLLERTYTRFRRAGAGLKDEAKARMAEINEQLAQLGTTF HHHEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH SHHVLGDEQDWFLELGEDDRAGLSDSFVAAAKAAAEERGMPGKAIVTLSRSSVEPFLQSS HHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHCC SRRDLREKVFKAFTARGDNGNTNDNNAVIGQILALREESAKIMGFPNFAVYRLEDSMAKT HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCEEEEEECHHHHCC PEAVRGLLERVWKPARAKALADRDQLQQLITEEGGNFKLEAWDWRYYAEKLRQAKANFDD HHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCC AAIKPYLALDNMVAAAFDCATRLFGITFAERKDIPVWHPDVRVWEIKEADGRHKALFYGD HHCCHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEH YFARPSKRSGAWMTSLRDQQKLDGDTAPLIINVCNFAKGADGQPSLLSPDDARTLFHEFG HHCCCCCCCCCHHHHHHHHHHCCCCCCCHHEEEHHCCCCCCCCCCCCCCHHHHHHHHHHC HGLHGILSNVTYPSLSGTSVFTDFVELPSQLYEHWQERPEVLQTFAKHYQTGEPLPQDLL CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH ERFLAARRFNQGFATVEFVSSALIDLEFHTQPAAASKDVRAFETAEMEKIGMPKEIALRH HHHHHHHHHCCCCHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHC RPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEEAGNIFDPAVAKRLHDNVYSSGGS CCCCCCCEECCCCCCHHHHHHHHHHHHCHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCC LDPEAAYVAFRGREPEPDALLRRRGLLDIPAAA CCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537804; 11677609 [H]