| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146342540
Identifier: 146342540
GI number: 146342540
Start: 5904360
End: 5905571
Strand: Direct
Name: 146342540
Synonym: BRADO5702
Alternate gene names: NA
Gene position: 5904360-5905571 (Clockwise)
Preceding gene: 146342539
Following gene: 146342541
Centisome position: 79.18
GC content: 64.27
Gene sequence:
>1212_bases ATGAGGCCCTCGACGCACGCCGTCGCCGCCGCCATCGCGCTTGCAGCGCTTTGCGGAACCGCTCACGCGCAGACGATCTC CGACGACATGGTCAAGATCGGCGTGCTCACGGACATGTCGAGCCTGTATGCCGACGCCACCGGCAAGGGTTCGCTGGTAG CGGTGCAGATGGCGGTCGAGGATTACGGCGGCAAGGTCAAGGGCAAGAAGGTCGAGGTGGTCTCCGCCGACCACCAGAAC AAGCCGGACGTCGGCGTCAACATCGCCCGCAACTGGTACGACAACGAGAAGGTCGACGCGATCTTCGACGTGCCGACCTC CTCGGTCGCGCTGCCGATCTCGGCGCTGACGCGCGAGAAGAACAAGATCCACATCAATTCCGGCGGCGGCTCCTCCGATA TCACCGGCACGCAGTGCTCGCCCAACACGGTGCACTGGACCTACGACACCTATGCGCTGTCCAACGTCGCCGGCAAGGCG ATGGTCAAACGCGGCGAGGACACCTGGTTCTTCATCACCGCCGACTACGCGTTCGGGCAGGCGCTGGAGCGCGACGCCGC CAACGTGGTGAAGGAAGCCGGCGGCAAGGTGCTCGGCGACGTGCGGCATCCGTTGAACTCGTCGGACTTCTCGTCCTTCG TGCTCCAGGCGCAGGCCTCCAAGGCGAAGGTCGTGGGCCTCGCAAATGCCGGCGGCGACACCCAGAACGCGCTGAAGCAG GCCGCCGAGTTCGGCCTGGCCCAGAGCGGCCAGAAGATGATCGCCTTGCTGATGGAGATCACCGACGTGCATTCGCTCGG CATCAAGTCGACATCAGGCCTGATCGTCACCGACGCGTTCTACTGGGACATGAACGACGAGACCCGCGCCTTCTCCAAGC GCTTCAACGAGAAGGTCGGGCACATGCCGACCATGATCCAGGCCGGCCTCTACTCCGCGACCATGCATTACCTCAAGGCC ATCGAGGCGATCGGCACCGACGAAGCGCCGAAGGTCATGGAGCAGATGCGCGCCACCCCCGTGAACGACTTCTTCGCCAA GAACGGCAAGATCCGCATCGACGGCCGCATGGTCCACGACATGTATCTGTTCGAGGTCAAGAAGCCCGAGGAGTCGAAGG GCGACTGGGATCTCTACAAGCTGATCGCGACCGTGCCGGGCGACGAGGCGTTCCGCCCGCTCGACAAGGGCGGCTGCCCG CTGGTGAAATAG
Upstream 100 bases:
>100_bases CCATCTGCTCAGCTTTGGCTCGGGTTTTTCTTGGCCGGTGCTGCAAGACCGGCTAGAGAGCAAAGGCCAACGAGCAAGAC ATCAAGAACGGGAGAAAACA
Downstream 100 bases:
>100_bases GACGGAACGAAACTCATATATTTGTTATTTGTCGCAGCACCGCTGCCCGATACCGTGCCCTCTCCCCTTGCGGGAGAGGG CAGCGCCGGCCCATCCTCTT
Product: putative ABC branched-chain amino transporter, periplasmic binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MRPSTHAVAAAIALAALCGTAHAQTISDDMVKIGVLTDMSSLYADATGKGSLVAVQMAVEDYGGKVKGKKVEVVSADHQN KPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDITGTQCSPNTVHWTYDTYALSNVAGKA MVKRGEDTWFFITADYAFGQALERDAANVVKEAGGKVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQ AAEFGLAQSGQKMIALLMEITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLKA IEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGDWDLYKLIATVPGDEAFRPLDKGGCP LVK
Sequences:
>Translated_403_residues MRPSTHAVAAAIALAALCGTAHAQTISDDMVKIGVLTDMSSLYADATGKGSLVAVQMAVEDYGGKVKGKKVEVVSADHQN KPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDITGTQCSPNTVHWTYDTYALSNVAGKA MVKRGEDTWFFITADYAFGQALERDAANVVKEAGGKVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQ AAEFGLAQSGQKMIALLMEITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLKA IEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGDWDLYKLIATVPGDEAFRPLDKGGCP LVK >Mature_403_residues MRPSTHAVAAAIALAALCGTAHAQTISDDMVKIGVLTDMSSLYADATGKGSLVAVQMAVEDYGGKVKGKKVEVVSADHQN KPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDITGTQCSPNTVHWTYDTYALSNVAGKA MVKRGEDTWFFITADYAFGQALERDAANVVKEAGGKVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQ AAEFGLAQSGQKMIALLMEITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATMHYLKA IEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGDWDLYKLIATVPGDEAFRPLDKGGCP LVK
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 43450; Mature: 43450
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSTHAVAAAIALAALCGTAHAQTISDDMVKIGVLTDMSSLYADATGKGSLVAVQMAVE CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEEEH DYGGKVKGKKVEVVSADHQNKPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREK HCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCEEEHHHHHCCC NKIHINSGGGSSDITGTQCSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFITADYAFGQ CEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH ALERDAANVVKEAGGKVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQ HHHHHHHHHHHHCCCCEEHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH AAEFGLAQSGQKMIALLMEITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVG HHHHCHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHC HMPTMIQAGLYSATMHYLKAIEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHD CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCEEEECCEEEEE MYLFEVKKPEESKGDWDLYKLIATVPGDEAFRPLDKGGCPLVK EEEEEECCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCC >Mature Secondary Structure MRPSTHAVAAAIALAALCGTAHAQTISDDMVKIGVLTDMSSLYADATGKGSLVAVQMAVE CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEEEH DYGGKVKGKKVEVVSADHQNKPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREK HCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCEEEHHHHHCCC NKIHINSGGGSSDITGTQCSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFITADYAFGQ CEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH ALERDAANVVKEAGGKVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQ HHHHHHHHHHHHCCCCEEHHHHCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH AAEFGLAQSGQKMIALLMEITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVG HHHHCHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHC HMPTMIQAGLYSATMHYLKAIEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHD CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCEEEECCEEEEE MYLFEVKKPEESKGDWDLYKLIATVPGDEAFRPLDKGGCPLVK EEEEEECCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA