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The map label for this gene is erfK [H]

Identifier: 146342536

GI number: 146342536

Start: 5901049

End: 5901747

Strand: Direct

Name: erfK [H]

Synonym: BRADO5698

Alternate gene names: 146342536

Gene position: 5901049-5901747 (Clockwise)

Preceding gene: 146342532

Following gene: 146342537

Centisome position: 79.14

GC content: 66.52

Gene sequence:

>699_bases
ATGATCACGTCAGGCACAGTCCGGTCACCCATCCGAGGCTTGTTCGGCGCACTCATTGCCGGTGCGATCATGGCCGCCAC
TCCGACCTACGCCGCCTCCCCGGCGCCGCTCCCCTTCCCGTTCCTGCTGCCGCCGCCGGTCGCGACCTACGAGCCGCCGG
CAACGGCGCCGCAGGTCGTCAATCCGCAAGAAGACGAGGCGGCGCCTTATGAGTTGCCCGCGCGACTGCGCCGCCAGGTC
GTGAGCTATTCGACGCGCGAGGCGCCCGGCACGATCGTGATCGATACGCCGAACAAGTACTTGTACTACGTGCTCGGCAA
CGGCCAGGCGATGCGCTACGGAATCGGCGTCGGCCGCGACGGCTTCACCTGGTCGGGCGTGCAGTCGATCACCAAAAAGG
CGGAATGGCCGGACTGGACACCGCCGCCGGAGATGATCGCCCGTCAACCCTATCTGCCGCGCCACATGGCCGGCGGCCCA
GGCAATCCGCTGGGTGCCCGCGCGATGTATCTCGGCGGCACAGTCTATCGCATTCACGGCACCAACGCGCCGGAAACGAT
CGGCACGCATGTGTCGTCGGGCTGCATCCGCCTGACCAACCAGGACGTGATCGATCTCTATTCCCGCGTCAATGTCGGCG
CCAAAGTAATCGTGCTGCCGATGGAGCGCCGCGCCGACCTTGGCCACGTTACGCGCTGA

Upstream 100 bases:

>100_bases
GGTCCAAAGCGCCACTAACAAAGATGACAAGCAGCTGATTTCAAAAGAGCCGGCCGAGACGACGGCGGCGCGCGCCAAGC
GATCAACCAAGGGGACGTCC

Downstream 100 bases:

>100_bases
TCGCATTTTCTTTCGCTCTCCAGGATCCTCCCTGACTGGACCGCCGCGGCCCCGTGCCCGGCGGTCATTTCTTTGCGCAT
GCCGGGGCGTTCACCATCAC

Product: putative ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MITSGTVRSPIRGLFGALIAGAIMAATPTYAASPAPLPFPFLLPPPVATYEPPATAPQVVNPQEDEAAPYELPARLRRQV
VSYSTREAPGTIVIDTPNKYLYYVLGNGQAMRYGIGVGRDGFTWSGVQSITKKAEWPDWTPPPEMIARQPYLPRHMAGGP
GNPLGARAMYLGGTVYRIHGTNAPETIGTHVSSGCIRLTNQDVIDLYSRVNVGAKVIVLPMERRADLGHVTR

Sequences:

>Translated_232_residues
MITSGTVRSPIRGLFGALIAGAIMAATPTYAASPAPLPFPFLLPPPVATYEPPATAPQVVNPQEDEAAPYELPARLRRQV
VSYSTREAPGTIVIDTPNKYLYYVLGNGQAMRYGIGVGRDGFTWSGVQSITKKAEWPDWTPPPEMIARQPYLPRHMAGGP
GNPLGARAMYLGGTVYRIHGTNAPETIGTHVSSGCIRLTNQDVIDLYSRVNVGAKVIVLPMERRADLGHVTR
>Mature_232_residues
MITSGTVRSPIRGLFGALIAGAIMAATPTYAASPAPLPFPFLLPPPVATYEPPATAPQVVNPQEDEAAPYELPARLRRQV
VSYSTREAPGTIVIDTPNKYLYYVLGNGQAMRYGIGVGRDGFTWSGVQSITKKAEWPDWTPPPEMIARQPYLPRHMAGGP
GNPLGARAMYLGGTVYRIHGTNAPETIGTHVSSGCIRLTNQDVIDLYSRVNVGAKVIVLPMERRADLGHVTR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=137, Percent_Identity=38.6861313868613, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787040, Length=135, Percent_Identity=38.5185185185185, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787356, Length=138, Percent_Identity=39.1304347826087, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787968, Length=137, Percent_Identity=36.4963503649635, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 25035; Mature: 25035

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSGTVRSPIRGLFGALIAGAIMAATPTYAASPAPLPFPFLLPPPVATYEPPATAPQVV
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NPQEDEAAPYELPARLRRQVVSYSTREAPGTIVIDTPNKYLYYVLGNGQAMRYGIGVGRD
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCEEEEECEECCC
GFTWSGVQSITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTVYRIHG
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHCCCCCCCCCCCEEEEECCEEEEEEC
TNAPETIGTHVSSGCIRLTNQDVIDLYSRVNVGAKVIVLPMERRADLGHVTR
CCCCHHHHHHHCCCEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MITSGTVRSPIRGLFGALIAGAIMAATPTYAASPAPLPFPFLLPPPVATYEPPATAPQVV
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NPQEDEAAPYELPARLRRQVVSYSTREAPGTIVIDTPNKYLYYVLGNGQAMRYGIGVGRD
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCEEEEECEECCC
GFTWSGVQSITKKAEWPDWTPPPEMIARQPYLPRHMAGGPGNPLGARAMYLGGTVYRIHG
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHCCCCCCCCCCCEEEEECCEEEEEEC
TNAPETIGTHVSSGCIRLTNQDVIDLYSRVNVGAKVIVLPMERRADLGHVTR
CCCCHHHHHHHCCCEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]