BacMap

Definition	Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession	NC_009445
Length	7,456,587

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The map label for this gene is yusZ [H]

Identifier: 146342399

GI number: 146342399

Start: 5741846

End: 5742703

Strand: Reverse

Name: yusZ [H]

Synonym: BRADO5556

Alternate gene names: 146342399

Gene position: 5742703-5741846 (Counterclockwise)

Preceding gene: 146342401

Following gene: 146342398

Centisome position: 77.02

GC content: 67.02

Gene sequence:

>858_bases
ATGAAATCCGTCGTCATCACCGGAGCCTCCACCGGCATCGGTTACGCCTGTTCGAAGCTGCTGCTCGCACGCGGCTTCCG
CGTGTTCGGCAGTGTTCGCAAGCCTGAAGACGCGGAGCGTCTGCGCGGCGAGCTCGGCGCCAATTTCGTTCCGCTGCTGT
TCGACGTCACCGATGAGGTGGCGGTGAAGGCGGCGGCCGGCGAGGTGCGCGCGGCTCTCAACGGCGAGGCGCTCGCGGGC
CTGGTCAACAATGCCGGCATTGCCGTCGCCGGGCCGATCACCGAGCTGCCGATCGACCAGTTTCGCAAGCAGATGGAGGT
CAATGTCATCGGCCCGGTCATCGCGACCCAGGCGTTCGCGCCGCTGCTCGGCGCCGATCCGGCGATGACCGGCGCGCGGG
GGCGGATCGTGATGATCAGCTCGGTCGCCGGCCGCAATGGCAATCCGCTGATGGCGCCGTATTCGACCTCCAAGCACGCC
GTCGAAGGATTGTCGGAGAGCCTGCGCCGCGAGCTGATGCTGTTCGGCATCGACGTCGTGATCATTGCGCCGGGCGCGGT
GAAGACCCCCATCTGGGCCAAGGCCGAGGAGGTCGACCTATCGCCCTACCAGAGCTCGCCGTTCTTTCCGGCCCTGCAAC
GCATCCGCGGCTTCATGCTGCATCTGGCCAAGACTGGGCTGCCGGCTGAAACCATCGCCGAGCACCTGCACCAGGCGCTG
ACGGCGCCTTCGCCGAAGGTGCGTTACGAGCTCGCGCCGGATCCGCTCAGGCAATGGATCGTCCGGGTGCTTCCCAAACG
CACGGTCGACCGTATCGTCGGCAAGCGGCTCGGCCTGTTGCCGGGGACCAAGGCCTGA

Upstream 100 bases:

>100_bases
CCAGCCACGGGCGGCGCAGACGTGACTTGAAGCGCGAAATCAGCACCAGCGTGACGCCGCATCCCGTGCGATAATCGGTT
CGCATCTTACTGAGGTCGCC

Downstream 100 bases:

>100_bases
TGCCGGCGGGCACGACGACCGGCAAGACCCTGGCGGAGCTCACCGGTCTGGTGGAGGACGCCATCCGCGCCGAGCCGGGC
TGCGACACCGCGCGCGTGCC

Product: oxidoreductase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKSVVITGASTGIGYACSKLLLARGFRVFGSVRKPEDAERLRGELGANFVPLLFDVTDEVAVKAAAGEVRAALNGEALAG
LVNNAGIAVAGPITELPIDQFRKQMEVNVIGPVIATQAFAPLLGADPAMTGARGRIVMISSVAGRNGNPLMAPYSTSKHA
VEGLSESLRRELMLFGIDVVIIAPGAVKTPIWAKAEEVDLSPYQSSPFFPALQRIRGFMLHLAKTGLPAETIAEHLHQAL
TAPSPKVRYELAPDPLRQWIVRVLPKRTVDRIVGKRLGLLPGTKA

Sequences:

>Translated_285_residues
MKSVVITGASTGIGYACSKLLLARGFRVFGSVRKPEDAERLRGELGANFVPLLFDVTDEVAVKAAAGEVRAALNGEALAG
LVNNAGIAVAGPITELPIDQFRKQMEVNVIGPVIATQAFAPLLGADPAMTGARGRIVMISSVAGRNGNPLMAPYSTSKHA
VEGLSESLRRELMLFGIDVVIIAPGAVKTPIWAKAEEVDLSPYQSSPFFPALQRIRGFMLHLAKTGLPAETIAEHLHQAL
TAPSPKVRYELAPDPLRQWIVRVLPKRTVDRIVGKRLGLLPGTKA
>Mature_285_residues
MKSVVITGASTGIGYACSKLLLARGFRVFGSVRKPEDAERLRGELGANFVPLLFDVTDEVAVKAAAGEVRAALNGEALAG
LVNNAGIAVAGPITELPIDQFRKQMEVNVIGPVIATQAFAPLLGADPAMTGARGRIVMISSVAGRNGNPLMAPYSTSKHA
VEGLSESLRRELMLFGIDVVIIAPGAVKTPIWAKAEEVDLSPYQSSPFFPALQRIRGFMLHLAKTGLPAETIAEHLHQAL
TAPSPKVRYELAPDPLRQWIVRVLPKRTVDRIVGKRLGLLPGTKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI150247226, Length=266, Percent_Identity=33.8345864661654, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI50726952, Length=291, Percent_Identity=32.9896907216495, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI22507405, Length=264, Percent_Identity=30.6818181818182, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI40548397, Length=273, Percent_Identity=29.3040293040293, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI214010158, Length=273, Percent_Identity=29.3040293040293, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI214010156, Length=273, Percent_Identity=29.3040293040293, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI22758144, Length=273, Percent_Identity=29.3040293040293, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI19743808, Length=289, Percent_Identity=31.1418685121107, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=35.4066985645933, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI44680136, Length=280, Percent_Identity=27.8571428571429, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI44680133, Length=280, Percent_Identity=27.8571428571429, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI17738292, Length=280, Percent_Identity=27.8571428571429, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI4504503, Length=209, Percent_Identity=35.8851674641148, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI119392083, Length=262, Percent_Identity=30.9160305343511, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI223718074, Length=263, Percent_Identity=32.6996197718631, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI157739938, Length=196, Percent_Identity=28.0612244897959, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=31.6326530612245, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=201, Percent_Identity=28.3582089552239, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7657478, Length=201, Percent_Identity=31.8407960199005, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=30.9644670050761, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4758504, Length=243, Percent_Identity=30.4526748971193, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI32455239, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031765, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=222, Percent_Identity=26.5765765765766, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI15277342, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786701, Length=277, Percent_Identity=34.2960288808664, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787335, Length=190, Percent_Identity=33.6842105263158, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788459, Length=222, Percent_Identity=27.9279279279279, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082100, Length=213, Percent_Identity=32.8638497652582, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789057, Length=218, Percent_Identity=28.4403669724771, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789378, Length=235, Percent_Identity=29.3617021276596, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=28.8770053475936, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367175, Length=203, Percent_Identity=30.0492610837438, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI2367365, Length=193, Percent_Identity=33.160621761658, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=293, Percent_Identity=28.3276450511945, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17557780, Length=199, Percent_Identity=34.6733668341709, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI32563809, Length=297, Percent_Identity=28.6195286195286, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17507613, Length=297, Percent_Identity=28.6195286195286, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI193210355, Length=274, Percent_Identity=28.4671532846715, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71997402, Length=202, Percent_Identity=30.6930693069307, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=206, Percent_Identity=31.0679611650485, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI72001658, Length=217, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559962, Length=205, Percent_Identity=29.7560975609756, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532177, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17559964, Length=204, Percent_Identity=30.8823529411765, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=200, Percent_Identity=29.5, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=205, Percent_Identity=30.2439024390244, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=196, Percent_Identity=30.1020408163265, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=30.9644670050761, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=282, Percent_Identity=26.241134751773, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=222, Percent_Identity=30.1801801801802, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319635, Length=198, Percent_Identity=30.3030303030303, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=31.9796954314721, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI281364494, Length=205, Percent_Identity=32.1951219512195, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=31.3432835820896, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641388, Length=266, Percent_Identity=32.3308270676692, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007238, Length=204, Percent_Identity=28.921568627451, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24651139, Length=293, Percent_Identity=24.9146757679181, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643142, Length=208, Percent_Identity=32.2115384615385, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17737361, Length=212, Percent_Identity=31.6037735849057, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI20128793, Length=198, Percent_Identity=25.2525252525253, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19922066, Length=190, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=31.6831683168317, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24648693, Length=199, Percent_Identity=33.1658291457286, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21355889, Length=199, Percent_Identity=33.1658291457286, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639444, Length=193, Percent_Identity=30.5699481865285, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648944, Length=223, Percent_Identity=29.1479820627803, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007234, Length=201, Percent_Identity=33.8308457711443, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24663911, Length=204, Percent_Identity=29.9019607843137, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=31.3131313131313, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007232, Length=198, Percent_Identity=32.8282828282828, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30368; Mature: 30368

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVVITGASTGIGYACSKLLLARGFRVFGSVRKPEDAERLRGELGANFVPLLFDVTDEV
CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHEECHHHH
AVKAAAGEVRAALNGEALAGLVNNAGIAVAGPITELPIDQFRKQMEVNVIGPVIATQAFA
HHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PLLGADPAMTGARGRIVMISSVAGRNGNPLMAPYSTSKHAVEGLSESLRRELMLFGIDVV
HHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEE
IIAPGAVKTPIWAKAEEVDLSPYQSSPFFPALQRIRGFMLHLAKTGLPAETIAEHLHQAL
EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TAPSPKVRYELAPDPLRQWIVRVLPKRTVDRIVGKRLGLLPGTKA
CCCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSVVITGASTGIGYACSKLLLARGFRVFGSVRKPEDAERLRGELGANFVPLLFDVTDEV
CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHEECHHHH
AVKAAAGEVRAALNGEALAGLVNNAGIAVAGPITELPIDQFRKQMEVNVIGPVIATQAFA
HHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PLLGADPAMTGARGRIVMISSVAGRNGNPLMAPYSTSKHAVEGLSESLRRELMLFGIDVV
HHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEE
IIAPGAVKTPIWAKAEEVDLSPYQSSPFFPALQRIRGFMLHLAKTGLPAETIAEHLHQAL
EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TAPSPKVRYELAPDPLRQWIVRVLPKRTVDRIVGKRLGLLPGTKA
CCCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]