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The map label for this gene is yvoA [H]

Identifier: 146342358

GI number: 146342358

Start: 5696469

End: 5697293

Strand: Reverse

Name: yvoA [H]

Synonym: BRADO5514

Alternate gene names: 146342358

Gene position: 5697293-5696469 (Counterclockwise)

Preceding gene: 146342362

Following gene: 146342357

Centisome position: 76.41

GC content: 66.18

Gene sequence:

>825_bases
TTGCGCACCGCGTCCGAGCCGCTGAAGGCACGACGGATCTACCTGTTGCTGAAGGACAAGATCGGATCCGGCGAGCTCGC
GGACGGCGAGCGGCTGCCCGGCGAATTCGCGCTCGCCGAAGAGCATAACGTCTCCCGTGTCACCATCCGCCAGGCGCTGG
ATCTGCTCGCGGGCGAGGGCCTGATCGAGAAGAAGAGCGGGCTCGGTACCTTCGTGCATCGTCCTGCGTCCAAGGTGCGG
ACAGTTCTTGCTGACGTGTCCAACGTGTTCGCGCATCTGATCGAGATGGGGCGCACGACAGACGTACGACTGTTGTCGTT
CGACTATGTCGCGCCGCCTGATCAGATCCGCGAAGCCTTGCAGCTCGCCCCCGACGAGCGCTCGCAGCGCTCGGTGCGCG
TCCGCCTCGTCGACGGCGTGCCGTTCTCTTATCTCATCGCCAACGTACCCGAGCGCATCGGCCGTAACTATTCGCGCGAG
GATCTCGCGCGCATGCCGCTGCTCGAATTGATCGAGCGCTCCGGTCTCACCAGCGCCTCGGCGCGGCAGGAGATCAGCGC
GGTGCTGTCGAGCCCCGACGTGGCGGAGGCGCTCGACATCGATGTCGGCATGCCGCTCGTGGCCTTGCGCCGCACGGTCT
ACGGTAAGGACGGCCAGCCGATGGAGCACCTTCAGGCACTCTACCGGCCCGATCGCTACACATTGCAGATGAACCTCGAA
CGGACGGGCGACGAAGGGCACCGGCACTGGAGCCCGACCGCCGAGGTGTACCGCAGGGAGCGCCCGCGCCGGCGGCCGCC
AGTCAGGAAAGTGGGGAAGTCATGA

Upstream 100 bases:

>100_bases
CAGAGGAGCCGCGCGAGCTGGTTGACCGAAGCTGTTATATTTTCTATACACCTACTGTATTGAAAGCAAGATAGCTCTGC
AACCTCGGGACATCTCACCC

Downstream 100 bases:

>100_bases
CGTTGAGCTCGAAGTCACTGTCACGCCGCACCGTGCTCAAAAGCGGTGTCGCGCTCACCTCGATGCTGGCGGCGCCTGGC
CTGCTGCGCGCCGAGCCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MRTASEPLKARRIYLLLKDKIGSGELADGERLPGEFALAEEHNVSRVTIRQALDLLAGEGLIEKKSGLGTFVHRPASKVR
TVLADVSNVFAHLIEMGRTTDVRLLSFDYVAPPDQIREALQLAPDERSQRSVRVRLVDGVPFSYLIANVPERIGRNYSRE
DLARMPLLELIERSGLTSASARQEISAVLSSPDVAEALDIDVGMPLVALRRTVYGKDGQPMEHLQALYRPDRYTLQMNLE
RTGDEGHRHWSPTAEVYRRERPRRRPPVRKVGKS

Sequences:

>Translated_274_residues
MRTASEPLKARRIYLLLKDKIGSGELADGERLPGEFALAEEHNVSRVTIRQALDLLAGEGLIEKKSGLGTFVHRPASKVR
TVLADVSNVFAHLIEMGRTTDVRLLSFDYVAPPDQIREALQLAPDERSQRSVRVRLVDGVPFSYLIANVPERIGRNYSRE
DLARMPLLELIERSGLTSASARQEISAVLSSPDVAEALDIDVGMPLVALRRTVYGKDGQPMEHLQALYRPDRYTLQMNLE
RTGDEGHRHWSPTAEVYRRERPRRRPPVRKVGKS
>Mature_274_residues
MRTASEPLKARRIYLLLKDKIGSGELADGERLPGEFALAEEHNVSRVTIRQALDLLAGEGLIEKKSGLGTFVHRPASKVR
TVLADVSNVFAHLIEMGRTTDVRLLSFDYVAPPDQIREALQLAPDERSQRSVRVRLVDGVPFSYLIANVPERIGRNYSRE
DLARMPLLELIERSGLTSASARQEISAVLSSPDVAEALDIDVGMPLVALRRTVYGKDGQPMEHLQALYRPDRYTLQMNLE
RTGDEGHRHWSPTAEVYRRERPRRRPPVRKVGKS

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=229, Percent_Identity=26.6375545851528, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=24.6753246753247, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082252, Length=238, Percent_Identity=24.7899159663866, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 30837; Mature: 30837

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTASEPLKARRIYLLLKDKIGSGELADGERLPGEFALAEEHNVSRVTIRQALDLLAGEG
CCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC
LIEKKSGLGTFVHRPASKVRTVLADVSNVFAHLIEMGRTTDVRLLSFDYVAPPDQIREAL
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
QLAPDERSQRSVRVRLVDGVPFSYLIANVPERIGRNYSREDLARMPLLELIERSGLTSAS
HCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHCCCCCHH
ARQEISAVLSSPDVAEALDIDVGMPLVALRRTVYGKDGQPMEHLQALYRPDRYTLQMNLE
HHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEE
RTGDEGHRHWSPTAEVYRRERPRRRPPVRKVGKS
CCCCCCCCCCCCHHHHHHHHCCCCCCCHHHCCCC
>Mature Secondary Structure
MRTASEPLKARRIYLLLKDKIGSGELADGERLPGEFALAEEHNVSRVTIRQALDLLAGEG
CCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCC
LIEKKSGLGTFVHRPASKVRTVLADVSNVFAHLIEMGRTTDVRLLSFDYVAPPDQIREAL
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
QLAPDERSQRSVRVRLVDGVPFSYLIANVPERIGRNYSREDLARMPLLELIERSGLTSAS
HCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHCCCCCHH
ARQEISAVLSSPDVAEALDIDVGMPLVALRRTVYGKDGQPMEHLQALYRPDRYTLQMNLE
HHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEE
RTGDEGHRHWSPTAEVYRRERPRRRPPVRKVGKS
CCCCCCCCCCCCHHHHHHHHCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]