BacMap

Definition	Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession	NC_009445
Length	7,456,587

Click here to switch to the map view.

The map label for this gene is yhdF [H]

Identifier: 146342298

GI number: 146342298

Start: 5640718

End: 5641575

Strand: Reverse

Name: yhdF [H]

Synonym: BRADO5453

Alternate gene names: 146342298

Gene position: 5641575-5640718 (Counterclockwise)

Preceding gene: 146342300

Following gene: 146342295

Centisome position: 75.66

GC content: 64.1

Gene sequence:

>858_bases
ATGTCCGATCACCCCACGCCGCCATTTCCGCCGCAGCGGCAGCCCATGCCGGGCACGACCGCCGCCATGCAGCCGAGGCC
AGATCACGGCGAGACAAGCTACAAGGGGGCGGGCAAGCTGACGGGCAAGAAGGCCGTCATCACCGGAGGCGACAGCGGCA
TCGGCCGCGCCGTGGCGATCGCCTATGCCCGCGAGGGCGCCGACATTCTCATCGCCTATCTCGATGAGCACGACGACGCC
AAGGAGGTTCAGCAACTGATCGAGAAGGAGGGCCGGAAAGCGCTGCTGATGTCCGGCAATATCCAGGATCCCGCGCATTG
CCGGGCGATCATCCAGCGTGCCGTCGACGAATTCGGCGGGATCGACATTCTCGTCAACAATGCCGCGCACCAGGCGACGT
TCAGCGACATCGGCGACATTTCGGATGAAGAGTGGGAGATCACCTTCCGCACCAACATCCATGCGATGTTCTATCTCACC
AAGGCGGCGGTGCCGCACATGAAGCCGGGCAGCGCGATCGTCAACACCGCCTCGGTCAATGCCGATATGCCGAATCCCGG
GCTGCTCGCTTACGCCACCACCAAGGGCGCGATTCAGAATTTCACCGGCGGACTCGCCCAGATGTTGGCGGAGAAGGGTA
TCCGCGCCAATGCCGTGGCGCCCGGCCCGATCTGGACACCGCTGATCCCCTCGACCATGCCGGAGGAGAAGATGAAGAGC
TTTGGCCAGCAGGTGCCGATGCAGCGTGCCGGCCAGCCGGCCGAACTGGCGACGGCCTATGTGATGCTCGCCGATCCGTT
GTCGAGCTACACGTCGGGGACGACGGTGGCGGTGACAGGGGGAAAGCCATTCATTTGA

Upstream 100 bases:

>100_bases
TGCCGTTCCGTAACGAACAGGCTGCCGCGGTCGCATCGCGCTCAGGAACGCCGTCTCCGCGCTGCGATTGAAGCTGCAGC
AACCGCCAGGAGCAGCACCG

Downstream 100 bases:

>100_bases
TAAGTCTGTCGGGACATCTCGGGCCTCATGGTTCGAGACGGCGCTGCGCGCCTCCTCACCATGAGGGTCAAAAGCCGAGG
GTGGAACTGCACAAGGACCA

Product: oxidoreductase NAD(P)-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSDHPTPPFPPQRQPMPGTTAAMQPRPDHGETSYKGAGKLTGKKAVITGGDSGIGRAVAIAYAREGADILIAYLDEHDDA
KEVQQLIEKEGRKALLMSGNIQDPAHCRAIIQRAVDEFGGIDILVNNAAHQATFSDIGDISDEEWEITFRTNIHAMFYLT
KAAVPHMKPGSAIVNTASVNADMPNPGLLAYATTKGAIQNFTGGLAQMLAEKGIRANAVAPGPIWTPLIPSTMPEEKMKS
FGQQVPMQRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI

Sequences:

>Translated_285_residues
MSDHPTPPFPPQRQPMPGTTAAMQPRPDHGETSYKGAGKLTGKKAVITGGDSGIGRAVAIAYAREGADILIAYLDEHDDA
KEVQQLIEKEGRKALLMSGNIQDPAHCRAIIQRAVDEFGGIDILVNNAAHQATFSDIGDISDEEWEITFRTNIHAMFYLT
KAAVPHMKPGSAIVNTASVNADMPNPGLLAYATTKGAIQNFTGGLAQMLAEKGIRANAVAPGPIWTPLIPSTMPEEKMKS
FGQQVPMQRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI
>Mature_284_residues
SDHPTPPFPPQRQPMPGTTAAMQPRPDHGETSYKGAGKLTGKKAVITGGDSGIGRAVAIAYAREGADILIAYLDEHDDAK
EVQQLIEKEGRKALLMSGNIQDPAHCRAIIQRAVDEFGGIDILVNNAAHQATFSDIGDISDEEWEITFRTNIHAMFYLTK
AAVPHMKPGSAIVNTASVNADMPNPGLLAYATTKGAIQNFTGGLAQMLAEKGIRANAVAPGPIWTPLIPSTMPEEKMKSF
GQQVPMQRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=33.6032388663968, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=30.4511278195489, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=28.8537549407115, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=27.3127753303965, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=30.1960784313725, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=31.8897637795276, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=30.0395256916996, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=30.4761904761905, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=31.8681318681319, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4504505, Length=212, Percent_Identity=28.7735849056604, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=28.9795918367347, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=28.9473684210526, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4758504, Length=233, Percent_Identity=30.4721030042918, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=27.1255060728745, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=38.8888888888889, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7706318, Length=212, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI142976729, Length=210, Percent_Identity=29.0476190476191, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=29.585798816568, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789378, Length=283, Percent_Identity=49.1166077738516, Blast_Score=279, Evalue=1e-76,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=35.7692307692308, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.1020408163265, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=32.9268292682927, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.5789473684211, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.6065573770492, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=30.2904564315353, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.5714285714286, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=27.34375, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=29.5918367346939, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=23.6263736263736, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787545, Length=256, Percent_Identity=24.21875, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.1285140562249, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=32.520325203252, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=33.0612244897959, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17531453, Length=277, Percent_Identity=33.5740072202166, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=32.7067669172932, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=29.3877551020408, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.203007518797, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.8270676691729, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=32.089552238806, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=32.7205882352941, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=30.4511278195489, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.4511278195489, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=30.6451612903226, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=30.3703703703704, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=29.6747967479675, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=29.4776119402985, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.2238805970149, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=30.5343511450382, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=27.8810408921933, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=29.2592592592593, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=30.3370786516854, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=28.0769230769231, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=29.6296296296296, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=203, Percent_Identity=30.0492610837438, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=33.1578947368421, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=30.7392996108949, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=27.6119402985075, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=278, Percent_Identity=28.0575539568345, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.7979797979798, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=27.3076923076923, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=227, Percent_Identity=26.8722466960352, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=25.9109311740891, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=28.4974093264249, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=224, Percent_Identity=26.7857142857143, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=204, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=214, Percent_Identity=30.8411214953271, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=25.7028112449799, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=209, Percent_Identity=25.8373205741627, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=30.5699481865285, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.9317269076305, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=32.9317269076305, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=32.520325203252, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=31.4516129032258, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=31.4516129032258, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=27.6, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI17737361, Length=227, Percent_Identity=29.0748898678414, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=25.7936507936508, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=32.6771653543307, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=29.2307692307692, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI18859837, Length=214, Percent_Identity=29.4392523364486, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30265; Mature: 30134

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHPTPPFPPQRQPMPGTTAAMQPRPDHGETSYKGAGKLTGKKAVITGGDSGIGRAVAI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE
AYAREGADILIAYLDEHDDAKEVQQLIEKEGRKALLMSGNIQDPAHCRAIIQRAVDEFGG
EEECCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
IDILVNNAAHQATFSDIGDISDEEWEITFRTNIHAMFYLTKAAVPHMKPGSAIVNTASVN
EEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEEECC
ADMPNPGLLAYATTKGAIQNFTGGLAQMLAEKGIRANAVAPGPIWTPLIPSTMPEEKMKS
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
FGQQVPMQRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI
HHHHCCHHHCCCCHHHHHEEHEECCCHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
SDHPTPPFPPQRQPMPGTTAAMQPRPDHGETSYKGAGKLTGKKAVITGGDSGIGRAVAI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE
AYAREGADILIAYLDEHDDAKEVQQLIEKEGRKALLMSGNIQDPAHCRAIIQRAVDEFGG
EEECCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
IDILVNNAAHQATFSDIGDISDEEWEITFRTNIHAMFYLTKAAVPHMKPGSAIVNTASVN
EEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEEECC
ADMPNPGLLAYATTKGAIQNFTGGLAQMLAEKGIRANAVAPGPIWTPLIPSTMPEEKMKS
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
FGQQVPMQRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI
HHHHCCHHHCCCCHHHHHEEHEECCCHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]