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The map label for this gene is phnF [C]

Identifier: 146342205

GI number: 146342205

Start: 5564422

End: 5565147

Strand: Direct

Name: phnF [C]

Synonym: BRADO5357

Alternate gene names: 146342205

Gene position: 5564422-5565147 (Clockwise)

Preceding gene: 146342195

Following gene: 146342215

Centisome position: 74.62

GC content: 70.94

Gene sequence:

>726_bases
ATGAGCATTGAGGACGCCGGATCTGGCGTGGCACTGTGGCGGCGCGTCGCCGACGGCATCGAGCGCGAGATCGCCGAAGG
TCGCTTCCCGGCGGGAACACGGCTGCCCGGCGAGACCGAGATCGCAGAGAGCTATCGTGTCAACCGCCACACCGTCCGCC
GCGCGCTCGCGACCCTGGCCGAACGCGGACTGGTGCGCGCCGAGCGCGGCAGCGGGACCTATGTCGAGGCCCCTCGCTTG
TCCTATCCGCTGCGTTCGCGCACGCGCTTCTCCGAGATCGTCGGCGCCGGCGGCCGCGAGCCGCGCGGACAGTTGATCGC
GGCATCCGAGGAGCCGGCGACGCGCGAGCTCGCGCGCGCGTTGGGATTGAAGACCGGCGCGCCTCTCATCCGCATCGAGG
CGCTGCGCTTCGCCGACAAGACGCCGATCTGCGTCAGCACGTCTTTTCTGTCAGCCGAGCGGTTTCCGGACGCGGGGGGC
ATCTTTGCCGCGGTCCGCTCGATGACGGCCCTGCTGGCGCATTACGGCATCCGCGACTATCGCCGCGGCGGGACCCGTAT
CACGGCTGCGATCGCCGACGCCGGCGACGCCGCGCGACTCGACCTCGCGTTGGGGCGCCCCGTGCTGGTCGTGGACAGCA
CCGACATCGACGCCGACGGCACCCCACTGGTCAGCAAGCGCTCGCGCTTTGCCGCGGAGCGCGTGACCTTCGAGGTGGAA
GGCTGA

Upstream 100 bases:

>100_bases
CGGCTCAAGTTGTCTATGATAATAGACAACTTGATAAGAGAGCGCCATGACTGTTTGATGACATGGCTGTGATTTTCGGC
AGCCGCTGGTTGGAGCCGCG

Downstream 100 bases:

>100_bases
TCGGCGTCCGCGGCGCGGCTCGAACCGCCAATCAGTCGATCAACGTCCCATCCGGATTGAAGAACGGGTGCGGCCCCTCG
AAGTCGCCGATCGGGACCTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSIEDAGSGVALWRRVADGIEREIAEGRFPAGTRLPGETEIAESYRVNRHTVRRALATLAERGLVRAERGSGTYVEAPRL
SYPLRSRTRFSEIVGAGGREPRGQLIAASEEPATRELARALGLKTGAPLIRIEALRFADKTPICVSTSFLSAERFPDAGG
IFAAVRSMTALLAHYGIRDYRRGGTRITAAIADAGDAARLDLALGRPVLVVDSTDIDADGTPLVSKRSRFAAERVTFEVE
G

Sequences:

>Translated_241_residues
MSIEDAGSGVALWRRVADGIEREIAEGRFPAGTRLPGETEIAESYRVNRHTVRRALATLAERGLVRAERGSGTYVEAPRL
SYPLRSRTRFSEIVGAGGREPRGQLIAASEEPATRELARALGLKTGAPLIRIEALRFADKTPICVSTSFLSAERFPDAGG
IFAAVRSMTALLAHYGIRDYRRGGTRITAAIADAGDAARLDLALGRPVLVVDSTDIDADGTPLVSKRSRFAAERVTFEVE
G
>Mature_240_residues
SIEDAGSGVALWRRVADGIEREIAEGRFPAGTRLPGETEIAESYRVNRHTVRRALATLAERGLVRAERGSGTYVEAPRLS
YPLRSRTRFSEIVGAGGREPRGQLIAASEEPATRELARALGLKTGAPLIRIEALRFADKTPICVSTSFLSAERFPDAGGI
FAAVRSMTALLAHYGIRDYRRGGTRITAAIADAGDAARLDLALGRPVLVVDSTDIDADGTPLVSKRSRFAAERVTFEVEG

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=236, Percent_Identity=28.3898305084746, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082252, Length=243, Percent_Identity=23.4567901234568, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788418, Length=235, Percent_Identity=23.8297872340426, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786950, Length=146, Percent_Identity=28.0821917808219, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1790118, Length=217, Percent_Identity=23.0414746543779, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25950; Mature: 25819

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEDAGSGVALWRRVADGIEREIAEGRFPAGTRLPGETEIAESYRVNRHTVRRALATLA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ERGLVRAERGSGTYVEAPRLSYPLRSRTRFSEIVGAGGREPRGQLIAASEEPATRELARA
HHCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH
LGLKTGAPLIRIEALRFADKTPICVSTSFLSAERFPDAGGIFAAVRSMTALLAHYGIRDY
HCCCCCCCEEEEEEEHHCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHH
RRGGTRITAAIADAGDAARLDLALGRPVLVVDSTDIDADGTPLVSKRSRFAAERVTFEVE
HCCCCEEEEEEECCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEC
G
C
>Mature Secondary Structure 
SIEDAGSGVALWRRVADGIEREIAEGRFPAGTRLPGETEIAESYRVNRHTVRRALATLA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ERGLVRAERGSGTYVEAPRLSYPLRSRTRFSEIVGAGGREPRGQLIAASEEPATRELARA
HHCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH
LGLKTGAPLIRIEALRFADKTPICVSTSFLSAERFPDAGGIFAAVRSMTALLAHYGIRDY
HCCCCCCCEEEEEEEHHCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHH
RRGGTRITAAIADAGDAARLDLALGRPVLVVDSTDIDADGTPLVSKRSRFAAERVTFEVE
HCCCCEEEEEEECCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]