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The map label for this gene is lsrR [H]

Identifier: 146341696

GI number: 146341696

Start: 4998955

End: 4999971

Strand: Reverse

Name: lsrR [H]

Synonym: BRADO4801

Alternate gene names: 146341696

Gene position: 4999971-4998955 (Counterclockwise)

Preceding gene: 146341700

Following gene: 146341695

Centisome position: 67.05

GC content: 67.65

Gene sequence:

>1017_bases
GTGACGACAGCTTCCGACAGGGCGCCCATGGTGGACGGCGAGGCTTCGCTGGCGACGCGTGCGGCGTGGCTGTATTTCGC
GGCCGGGCTGACGCAATCGGAGGTCGCCGACCGGCTCAACATCCAGAGCACCAAGGCGCATCGCCTGATTGCGCGCGCCA
GCCGCGAAGGCATGATCCGCGTGTTCGTCGAGGGTCCCGTCGCCGAATGCGTCGCGCTGGAGAATGCGCTCGCCGACCGC
TACGGCCTCGACTTCTGCCGCGTCGCGCCGGATCTCGGCGAGGGCGACCTGCCGCTGAAGGCGCTGGCGCTGGAGGGCGC
GAGCTTCCTGCGCCAGGTGTTGGAGCGCGGCGACGACAAGATCATCGGCGTCGGCCACGGCCGCACGCTCGCGGCCGTCG
TGGCGCAGTTGCCGCAGACGCCCGCGCGCGACGTGCAGTTCGTCTCGCTGCTCGGCGGCCTGACGCGAAAATTCGCGGCC
AATCCGTTCGACGTCATCCATCGCCTCGCCGAGCGCACCGGCGCGGAGGCCTATCTGCTGCCGGTGCCGGTGTTCGCCAA
TTCCGTCGCCGACCGCCGTGTGCTGATGCAGCAGTTCGGCATCGCCGACGTGTTCGCGCTGGCCCAGCAGGCCTCGCTGC
TGTTCGTCGGTATCGGCCAGATCCACGCCGACGGCTTCCTGGTGTCGAGCGGCATGATCAAGCCCGACGAGGTCGTCGAG
CTGAAGCGCGCTGGCGCCTGCGCCGATCTGCTCGGGCACTTCTTCAACGCCGAGGGCGAGTTGCTCGATCTCGACCTGTC
GGCGCGCGCCACCTCGATGGCGGCGAGCGATCTCAAGAAACACCGCATCGTCGCCATCGGCGGCGGCGAAGCGAAGATCA
CGGCCCTGCGCGCGGTGCTGCGCAGCGGCTTTCTGAACGGCCTCATCATCGATGAGGTGACGGCTCAGGCACTCAGTACC
GACAAGCCGGAGAAAACATCCGGTGTTCTTAAAAACAAAAGTCGGAAGGGCAGGTAA

Upstream 100 bases:

>100_bases
GCGTGGGCGTTGCGCTGCAGCACGTTTAAGGGATTGACGGCCGGATCAGCGTCTGCAATTTTTTGCAAGGTGTGAAGAAT
TTTGCAAGTAGGCATTCGGC

Downstream 100 bases:

>100_bases
CGCGAAAAGTCTCCAAAAAATAGGGAGGGTTGAATGTACGACCGTGAGAAGAATCTCTTTGCGTCCTATGCCGGCAAGCA
CATCAGCCGGCGTGATCTGC

Product: putative transcription regulator (EryD-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTTASDRAPMVDGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECVALENALADR
YGLDFCRVAPDLGEGDLPLKALALEGASFLRQVLERGDDKIIGVGHGRTLAAVVAQLPQTPARDVQFVSLLGGLTRKFAA
NPFDVIHRLAERTGAEAYLLPVPVFANSVADRRVLMQQFGIADVFALAQQASLLFVGIGQIHADGFLVSSGMIKPDEVVE
LKRAGACADLLGHFFNAEGELLDLDLSARATSMAASDLKKHRIVAIGGGEAKITALRAVLRSGFLNGLIIDEVTAQALST
DKPEKTSGVLKNKSRKGR

Sequences:

>Translated_338_residues
MTTASDRAPMVDGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECVALENALADR
YGLDFCRVAPDLGEGDLPLKALALEGASFLRQVLERGDDKIIGVGHGRTLAAVVAQLPQTPARDVQFVSLLGGLTRKFAA
NPFDVIHRLAERTGAEAYLLPVPVFANSVADRRVLMQQFGIADVFALAQQASLLFVGIGQIHADGFLVSSGMIKPDEVVE
LKRAGACADLLGHFFNAEGELLDLDLSARATSMAASDLKKHRIVAIGGGEAKITALRAVLRSGFLNGLIIDEVTAQALST
DKPEKTSGVLKNKSRKGR
>Mature_337_residues
TTASDRAPMVDGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIRVFVEGPVAECVALENALADRY
GLDFCRVAPDLGEGDLPLKALALEGASFLRQVLERGDDKIIGVGHGRTLAAVVAQLPQTPARDVQFVSLLGGLTRKFAAN
PFDVIHRLAERTGAEAYLLPVPVFANSVADRRVLMQQFGIADVFALAQQASLLFVGIGQIHADGFLVSSGMIKPDEVVEL
KRAGACADLLGHFFNAEGELLDLDLSARATSMAASDLKKHRIVAIGGGEAKITALRAVLRSGFLNGLIIDEVTAQALSTD
KPEKTSGVLKNKSRKGR

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=310, Percent_Identity=29.0322580645161, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87082414, Length=306, Percent_Identity=23.202614379085, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36041; Mature: 35910

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTASDRAPMVDGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE
VFVEGPVAECVALENALADRYGLDFCRVAPDLGEGDLPLKALALEGASFLRQVLERGDDK
EEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
IIGVGHGRTLAAVVAQLPQTPARDVQFVSLLGGLTRKFAANPFDVIHRLAERTGAEAYLL
EEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
PVPVFANSVADRRVLMQQFGIADVFALAQQASLLFVGIGQIHADGFLVSSGMIKPDEVVE
ECHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEECEEECCCEEEECCCCCHHHHHH
LKRAGACADLLGHFFNAEGELLDLDLSARATSMAASDLKKHRIVAIGGGEAKITALRAVL
HHHCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHH
RSGFLNGLIIDEVTAQALSTDKPEKTSGVLKNKSRKGR
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTASDRAPMVDGEASLATRAAWLYFAAGLTQSEVADRLNIQSTKAHRLIARASREGMIR
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE
VFVEGPVAECVALENALADRYGLDFCRVAPDLGEGDLPLKALALEGASFLRQVLERGDDK
EEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
IIGVGHGRTLAAVVAQLPQTPARDVQFVSLLGGLTRKFAANPFDVIHRLAERTGAEAYLL
EEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
PVPVFANSVADRRVLMQQFGIADVFALAQQASLLFVGIGQIHADGFLVSSGMIKPDEVVE
ECHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEECEEECCCEEEECCCCCHHHHHH
LKRAGACADLLGHFFNAEGELLDLDLSARATSMAASDLKKHRIVAIGGGEAKITALRAVL
HHHCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHH
RSGFLNGLIIDEVTAQALSTDKPEKTSGVLKNKSRKGR
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA